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bioRxiv · 10.1101/2020.06.28.176586

High-performance pipeline for MutMap and QTL-seq

Sugihara, Y.·Young, L.·Yaegashi, H.·Natsume, S.·Shea, D. J.·Takagi, H.·Booker, H.·Innan, H.·Terauchi, R.·Abe, A.
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Abstract

Bulked segregant analysis implemented in MutMap and QTL-seq is a powerful and efficient method to identify agronomically important loci. However, the previous pipelines were not user-friendly to install and run. Here, we describe new pipelines for MutMap and QTL-seq. These updated pipelines are approximately 5-8 times faster than the previous pipeline, are easier for novice users to use and can be easily installed through bioconda with all dependencies.

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Sugihara, Y., Young, L., Yaegashi, H., Natsume, S., Shea, D. J., Takagi, H., Booker, H., Innan, H., Terauchi, R., Abe, A.. 2020-06-29. High-performance pipeline for MutMap and QTL-seq. https://doi.org/10.1101/2020.06.28.176586

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