The Profiling of Bisecting N-acetylglucosamine (GlcNAc) Modification in Human Amniotic Membrane by Glycomic and Glycoproteomic Analyses

Chen, Q.; zhang, y.; Zhang, K.; Liu, J.; Pan, H.; Wang, X.; Li, S.; Hu, D.; Lin, Z.; Zhao, Y.; Hou, G.; Guan, F.; Li, H.; Liu, S.; Ren, Y.

doi:10.1101/2020.06.09.141168

bioRxiv · 10.1101/2020.06.09.141168

The Profiling of Bisecting N-acetylglucosamine (GlcNAc) Modification in Human Amniotic Membrane by Glycomic and Glycoproteomic Analyses

Chen, Q.·zhang, y.·Zhang, K.·Liu, J.·Pan, H.·Wang, X.·Li, S.·Hu, D.·Lin, Z.·Zhao, Y.·Hou, G.·Guan, F.·Li, H.·Liu, S.·Ren, Y.

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Abstract

It is acknowledged that the bisecting N-acetylglucosamine (GlcNAc) structure, a GlcNAc linked to the core {beta}-mannose residue via a {beta}1,4 linkage, represents a special type of N-glycosylated modification and has been reported to be involved in various biological processes, such as cell adhesion and fetal development. Clark et al. has found that the majority of N-glycans in human trophoblasts bearing a bisecting GlcNAc. This type of glycan has been reported to help trophoblasts get resistant to natural killer (NK) cell-mediated cytotoxicity, and this would provide a possible explanation for the question how could the mother nourish a fetus within herself without rejection. Herein, we hypothesized that human amniotic membrane which is the last barrier for the fetus may also express bisecting type glycans to protect the fetus. To test this hypothesis, glycomic analysis of human amniotic membrane was performed, and the bisecting N-glycans with high abundance were detected. In addition, we re-analyzed our proteomic data with high fractionation and amino acid sequence coverage from human amniotic membrane, which had been released for the exploration of human missing proteins. The presence of bisecting GlcNAc peptides was revealed and confirmed. A total of 41 glycoproteins with 43 glycopeptides were found to possess a bisecting GlcNAc, 25 of which are for the first time to be reported to have this type of modification. These results provide the profiling of bisecting GlcNAc modification in human amniotic membrane and benefit to the function studies of glycoproteins with bisecting GlcNAc modification and the function studies in immune suppression of human placenta. The mass spectrometry placenta data are available via ProteomeXchange (PXD010630).

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Chen, Q., zhang, y., Zhang, K., Liu, J., Pan, H., Wang, X., Li, S., Hu, D., Lin, Z., Zhao, Y., Hou, G., Guan, F., Li, H., Liu, S., Ren, Y.. 2020-06-09. The Profiling of Bisecting N-acetylglucosamine (GlcNAc) Modification in Human Amniotic Membrane by Glycomic and Glycoproteomic Analyses. https://doi.org/10.1101/2020.06.09.141168

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