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bioRxiv · 10.1101/2020.04.04.025379

Gexplora - user interface that highlights and explores the density of genomic elements along a chromosomal sequence

Nussbaumer, T.·Debnath, O.·Heidari, P.
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Abstract

The density of genomic elements such as genes or transposable elements along its consecutive sequence can provide an overview of a genomic sequence while in the detailed analysis of candidate genes it may depict enriched chromosomal hotspots harbouring genes that explain a certain trait. The herein presented python-based graphical user interface Gexplora allows to obtain more information about a genome by considering sequence-intrinsic information from external databases such as Ensembl, OMA and STRING database using REST API calls to retrieve sequence-intrinsic information, protein-protein datasets and orthologous groups. Gexplora is available under https://github.com/nthomasCUBE/Gexplora.

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Nussbaumer, T., Debnath, O., Heidari, P.. 2020-04-05. Gexplora - user interface that highlights and explores the density of genomic elements along a chromosomal sequence. https://doi.org/10.1101/2020.04.04.025379

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