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bioRxiv · 10.1101/2020.03.17.996033

TRTools: a toolkit for genome-wide analysis of tandem repeats

Mousavi, N.·Margoliash, J.·Pusarla, N.·Saini, S.·Yanicky, R.·Gymrek, M.
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Abstract

SummaryA rich set of tools have recently been developed for performing genome-wide genotyping of tandem repeats (TRs). However, standardized tools for downstream analysis of these results are lacking. To facilitate TR analysis applications, we present TRTools, a Python library and a suite of command-line tools for filtering, merging, and quality control of TR genotype files. TRTools utilizes an internal harmonization module making it compatible with outputs from a wide range of TR genotypers. AvailabilityTRTools is freely available at https://github.com/gymreklab/TRTools. Contactmgymrek@eng.ucsd.edu Supplementary informationSupplementary data are available at bioRxiv.

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Mousavi, N., Margoliash, J., Pusarla, N., Saini, S., Yanicky, R., Gymrek, M.. 2020-03-18. TRTools: a toolkit for genome-wide analysis of tandem repeats. https://doi.org/10.1101/2020.03.17.996033

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