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bioRxiv · 10.1101/2020.03.15.992420

NOSA, an analytical toolbox for multicellular optical electrophysiology

Raccuglia, D.
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Abstract

Understanding how neural networks generate activity patterns and communicate with each other requires monitoring the electrical activity from many neurons simultaneously. Perfectly suited tools for addressing this challenge are genetically encoded voltage indicators (GEVIs) because they can be targeted to specific cell types and optically report the electrical activity of individual, or populations of neurons. However, analyzing and interpreting the data from voltage imaging experiments is challenging because high recording speeds and properties of current GEVIs yield only low signal-to-noise ratios, making it necessary to apply specific analytical tools. Here, we present NOSA (Neuro-Optical Signal Analysis), a novel open source software designed for analyzing voltage imaging data and identifying temporal interactions between electrical activity patterns of different origin. In this manuscript we explain the challenges that arise during voltage imaging experiments and provide hands-on analytical solutions. We demonstrate how NOSAs baseline fitting, filtering algorithms and movement correction can compensate for shifts in baseline fluorescence and extract electrical patterns from low signal-to-noise recordings. Moreover, NOSA contains powerful features to identify oscillatory frequencies in electrical patterns and extract neuronal firing characteristics. NOSA is the first open-access software to provide an option for analyzing simultaneously recorded optical and electrical data derived from patch-clamp or other electrode-based recordings. To identify temporal relations between electrical activity patterns we implemented different options to perform cross correlation analysis, demonstrating their utility during voltage imaging in Drosophila and mice. All features combined, NOSA will facilitate the first steps into using GEVIs and help to realize their full potential for revealing cell-type specific connectivity and functional interactions. If you would like to test NOSA, please send an email to the lead contact.

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Raccuglia, D.. 2020-03-16. NOSA, an analytical toolbox for multicellular optical electrophysiology. https://doi.org/10.1101/2020.03.15.992420

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