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bioRxiv · 10.1101/2020.01.25.918136

Atomistic Molecular Dynamics Simulations of Trioleoylglycerol - Phospholipid Membrane Systems

Mirza, A. H.·Akram, H. M.·Raza, M. S.
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Abstract

Adiposomes are phospholipid coated triacylglyceride particles that serve as structural models of the fat storage compartments of cells, known as lipid droplets (LDs); however, unlike LDs, they do not carry proteins. There is a deficit of available methods and experimental data regarding the internal packing of the adiposomes, and computer simulations offer a promising way to pinpoint the molecular arrangements within these structures. However, in the absence of a triacylglycerol-specific atomic forcefield, thus far, all adiposome/LD simulations have been performed with the coarse grained/united atom forcefields. Yet it is desirable to model the phospholipid/triacylglycerol interface with atomic resolution. In the present study, we first prepared a 2-monooleoylglycerol (MOG) forcefield which was then used to build a trioleoylglycerol (TOG) forcefield by the modular approach of the AMBER software suite. TOG bilayer membrane (2L) systems were modelled from two different initial conformations; TOG3 and TOG2:1. The simulations revealed that TOG2:1 is the most populated conformation in TOG membranes, irrespective of the starting conformation. Some other parameter optimizations were performed for TOG membranes based on which adiposome mimicking tetralayer membrane system (4L) was prepared with a TOG bilayer at core surrounded by two DOPC leaflets. The 4L membranes were stable throughout the simulations, however it was observed that a small amount of cations and water diffused from surface to the TOG core of the membrane. Based on these results a TAG-packing model was also developed. It is expected that the availability of MOG forcefield will equip future studies with a framework for molecular dynamics simulations of adiposomes/LDs. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=87 SRC="FIGDIR/small/918136v1_ufig1.gif" ALT="Figure 1"> View larger version (51K): org.highwire.dtl.DTLVardef@e79991org.highwire.dtl.DTLVardef@113291corg.highwire.dtl.DTLVardef@f02014org.highwire.dtl.DTLVardef@ca4227_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Mirza, A. H., Akram, H. M., Raza, M. S.. 2020-01-25. Atomistic Molecular Dynamics Simulations of Trioleoylglycerol - Phospholipid Membrane Systems. https://doi.org/10.1101/2020.01.25.918136

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