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bioRxiv · 10.1101/2020.01.03.893966

Predicting long-term multicategory cause of death in patients with prostate cancer: random forest versus multinomial model

Wang, J.·Deng, F.·Zeng, F.·Shanahan, A. J.·Zhang, L.
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Abstract

Patients with prostate cancer more likely die of non-cancer cause of death (COD) than prostate cancer. It is thus important to accurately predict multi-category COD in these patients. Random forest (RF), a popular machine learning model, has been shown useful for predicting binary cancer-specific deaths. However, its accuracy for predicting multi-category COD in cancer patients is unclear. We included patients in Surveillance, Epidemiology, and End Results-18 cancer registry-program with prostate cancer diagnosed in 2004 (followed-up through 2016). They were randomly divided into training and testing sets with equal sizes. We evaluated prediction accuracies of RF and conventional-statistical/multinomial models for 6-category COD by data-encoding types using the 2-fold cross-validation approach. Among 49,864 prostate cancer patients, 29,611 (59.4%) were alive at the end of follow-up, and 5,448 (10.9%) died of cardiovascular disease, 4,607 (9.2%) of prostate cancer, 3,681 (7.4%) of Non-Prostate cancer, 717 (1.4%) of infection, and 5,800 (11.6%) of other causes. We predicted 6-category COD among these patients with a mean accuracy of 59.1% (n=240, 95% CI, 58.7%-59.4%) in RF models with one-hot encoding, and 50.4% (95% CI, 49.7%-51.0%) in multinomial models. Tumor characteristics, prostate-specific antigen level, and diagnosis confirmation-method were important in RF and multinomial models. In RF models, no statistical differences were found between the accuracies of development versus cross validation phases, and those of categorical versus one-hot encoding. We here report a RF model that has an accuracy of 59.1% in predicting long-term 6-category COD among prostate cancer patients. It outperforms multinomial logistic models (absolute prediction-accuracy difference, 8.7%).

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Wang, J., Deng, F., Zeng, F., Shanahan, A. J., Zhang, L.. 2020-01-03. Predicting long-term multicategory cause of death in patients with prostate cancer: random forest versus multinomial model. https://doi.org/10.1101/2020.01.03.893966

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