Metagenomic Insights into The Diversity and Functions of Microbial Assemblages in Tasik Kenyir Ecosystem

Mohd Noor, M. E.; Syed Jamil Fadaak, S. N. E.; Mat Isa, M. N.; Abu Bakar, M. F.; Abdullah, M. D.-D.

doi:10.1101/176453

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bioRxiv · 10.1101/176453

Metagenomic Insights into The Diversity and Functions of Microbial Assemblages in Tasik Kenyir Ecosystem

Mohd Noor, M. E.·Syed Jamil Fadaak, S. N. E.·Mat Isa, M. N.·Abu Bakar, M. F.·Abdullah, M. D.-D.

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Abstract

Tropical freshwater lake such as Tasik Kenyir are underrepresented among the growing number of environmental metagenomic data sets. In Tasik Kenyir, water from two different sites, pristine and disturbed areas were sampled. After the filtration process, genomic DNA from both sites were extracted using Meta-G-nome DNA isolation kit and shotgun metagenomic sequencing was carried out on Illumina HiSeq2500 Desktop Sequencer (Illumina, Inc.). Raw data were then trimmed and assembled using Metagenomic Assembler program, MetaVelvet. Data analysis was carried out using software Blast2GO (BioBam Bioinformatic S.L). The total number of sequence reads was 189,158 from TKS1.5m (disturbed area) and 246,577 from TKS2.5m (pristine area).The results indicate that sequence reads of microbial species were presence at disturbed area near the aquaculture zone was lower than the sequence reads of microbial species were presence at pristine area. When compared to archaea, both samples were dominated by bacteria (more than 90%) suggesting that bacteria are absolutely dominant in the prokaryotic communities in the freshwater samples. The lake appears to contain a mixture of autotrophs and heterotrophs capable of performing main biogeochemical cycles like nitrogen fixation by Klebsiella sp for TKS1.5m and Pontibacter sp. for TKS2.5m. and carbon fixation by heterotrophic Alcaligenes sp. and Shewanella decolorationi in TKS1.5m, and by Pantoea sp. in TKS2.5m. Present study will advance our understanding of the importance of freshwater microbial communities for ecosystem and human health.

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Mohd Noor, M. E., Syed Jamil Fadaak, S. N. E., Mat Isa, M. N., Abu Bakar, M. F., Abdullah, M. D.-D.. 2017-08-15. Metagenomic Insights into The Diversity and Functions of Microbial Assemblages in Tasik Kenyir Ecosystem. https://doi.org/10.1101/176453

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