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bioRxiv · 10.1101/099796

QuPath: Open source software for digital pathology image analysis

Bankhead, P.·Loughrey, M. B.·Fernandez, J. A.·Dombrowski, Y.·McArt, D. G.·Dunne, P. D.·McQuaid, S.·Gray, R. T.·Murray, L. J.·Coleman, H. G.·James, J. A.·Salto-Tellez, M.·Hamilton, P. W.
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Abstract

QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPaths flexible design make it suitable for a wide range of additional image analysis applications across biomedical research.

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Bankhead, P., Loughrey, M. B., Fernandez, J. A., Dombrowski, Y., McArt, D. G., Dunne, P. D., McQuaid, S., Gray, R. T., Murray, L. J., Coleman, H. G., James, J. A., Salto-Tellez, M., Hamilton, P. W.. 2017-01-12. QuPath: Open source software for digital pathology image analysis. https://doi.org/10.1101/099796

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