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bioRxiv · 10.1101/099010

Building containerized workflows for RNA-seq data using the BioDepot-workflow-Builder (BwB)

Hung, L.-H.·Meiss, T.·Keswani, J.·Xiong, Y.·Sobie, E.·Yeung, K. Y.
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Abstract

We present the BioDepot-workflow-builder (Bwb), a software tool that allows users to create and execute reproducible bioinformatics workflows using a drag-and-drop interface. Graphical widgets represent Docker containers executing a modular task. Widgets are then graphically linked to build bioinformatics workflows that can be reproducibly deployed across different local and cloud platforms. Each widget contains a form-based user interface to facilitate parameter entry and a console to display intermediate results. Bwb provides tools for rapid customization of widgets, containers and workflows. Saved workflows can be shared using Bwbs native format or exported as shell scripts.

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Hung, L.-H., Meiss, T., Keswani, J., Xiong, Y., Sobie, E., Yeung, K. Y.. 2017-01-06. Building containerized workflows for RNA-seq data using the BioDepot-workflow-Builder (BwB). https://doi.org/10.1101/099010

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