MultiCellDS: a standard and a community for sharing multicellular data

Friedman, S. H.; Anderson, A. R. A.; Bortz, D. M.; Fletcher, A. G.; Frieboes, H. B.; Ghaffarizadeh, A.; Grimes, D. R.; Hawkins-Daarud, A.; Hoehme, S.; Juarez, E. F.; Kesselman, C.; Merks, R. M. H.; Mumenthaler, S. M.; Newton, P. K.; Norton, K.-A.; Rawat, R.; Rockne, R. C.; Ruderman, D.; Scott, J.; Sindi, S. S.; Sparks, J. L.; Swanson, K.; Agus, D. B.; Macklin, P.

doi:10.1101/090696

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bioRxiv · 10.1101/090696

MultiCellDS: a standard and a community for sharing multicellular data

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Abstract

Cell biology is increasingly focused on cellular heterogeneity and multicellular systems. To make the fullest use of experimental, clinical, and computational efforts, we need standardized data formats, community-curated \"public data libraries\", and tools to combine and analyze shared data. To address these needs, our multidisciplinary community created MultiCellDS (MultiCellular Data Standard): an extensible standard, a library of digital cell lines and tissue snapshots, and support software. With the help of experimentalists, clinicians, modelers, and data and library scientists, we can grow this seed into a community-owned ecosystem of shared data and tools, to the benefit of basic science, engineering, and human health.

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Friedman, S. H., Anderson, A. R. A., Bortz, D. M., Fletcher, A. G., Frieboes, H. B., Ghaffarizadeh, A., Grimes, D. R., Hawkins-Daarud, A., Hoehme, S., Juarez, E. F., Kesselman, C., Merks, R. M. H., Mumenthaler, S. M., Newton, P. K., Norton, K.-A., Rawat, R., Rockne, R. C., Ruderman, D., Scott, J., Sindi, S. S., Sparks, J. L., Swanson, K., Agus, D. B., Macklin, P.. 2016-12-09. MultiCellDS: a standard and a community for sharing multicellular data. https://doi.org/10.1101/090696

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