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bioRxiv · 10.1101/081075

BioBlocks: Programming protocols in biology made easier

Gupta, V.·Irimia, J.·Pau, I.·Rodriguez-Paton, A.
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Abstract

The methods to execute biological experiments are evolving. Affordable fluid handling robots and on-demand biology enterprises are making automating entire experiments a reality. Automation offers the benefit of high-throughput experimentation, rapid prototyping and improved reproducibility of results. However, learning to automate and codify experiments is a difficult task as it requires programming expertise. Here, we present a web-based visual development environment called BioBlocks for describing experimental protocols in biology. It is based on Googles Blockly and Scratch, and requires little or no experience in computer programming to automate the execution of experiments. The experiments can be specified, saved, modified and shared between multiple users in an easy manner. BioBlocks is open-source and can be customized to execute protocols on local robotic platforms or remotely i.e. in the cloud. It aims to serve as a de facto open standard for programming protocols in Biology.\n\n\n\nO_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=136 SRC=\"FIGDIR/small/081075_ufig1.gif\" ALT=\"Figure 1\">\nView larger version (51K):\norg.highwire.dtl.DTLVardef@108403corg.highwire.dtl.DTLVardef@b15c17org.highwire.dtl.DTLVardef@14ed6forg.highwire.dtl.DTLVardef@1f046c4_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Gupta, V., Irimia, J., Pau, I., Rodriguez-Paton, A.. 2016-10-14. BioBlocks: Programming protocols in biology made easier. https://doi.org/10.1101/081075

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