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bioRxiv · 10.1101/001230

libRoadRunner: A High Performance SBML Compliant Simulator

Herbert M Sauro·Totte T Karlsson·Maciej Swat·Michal Galdzicki·Andy Somogyi
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Abstract

SummaryWe describe libRoadRunner, a cross-platform, open-source, high performance C++ library for running and analyzing SBML-compliant models. libRoadRunner was created primarily to achieve high performance, ease of use, portability and an extensible architecture. libRoadRunner includes a comprehensive API, Plugin support, Python scripting and additional functionality such as stoichio-metric and metabolic control analysis.\n\nAccessibility and ImplementationTo maximize collaboration, we made libRoadRunner open source and released it under the Apache License, Version 2.0. To facilitate reuse, we have developed comprehensive Python bindings using SWIG (swig.org) and a C API. Li-bRoadRunner uses a number of statically linked third party libraries including: LLVM [4], libSBML [1], CVODE, NLEQ2, LAPACK and Poco. LibRoadRunner is supported on Windows, Mac OS X and Linux.\n\nSupplementary informationOnline documentation, build instructions and git source repository are available at http://www.libroadrunner.org

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Herbert M Sauro, Totte T Karlsson, Maciej Swat, Michal Galdzicki, Andy Somogyi. 2013-12-12. libRoadRunner: A High Performance SBML Compliant Simulator. https://doi.org/10.1101/001230

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