EXPLORE CONNECTIONS
MXP: Modular eXpandable framework for building bioinformatics Pipelines
Follow the relationships that help you find your next source.
Based on 525 indexed works selected for this snapshot; the candidate window is limited. Counts describe this index, not the complete source archives. Prepared from the PostgreSQL corpus; source versions are checked before display. Snapshot 2026-11-08. Up to 32 works or names per graph.
Subjects & research connections
Connections use shared source subjects, names, places, and explicitly mentioned entities. A shared label is not evidence of a citation, experimental result, or verified species identification.
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Relationships as a list (31)
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 2. Quantitative analysis of neuronal mitochondrial movement reveals patterns resulting from neurotoxicity of rotenone and 6-hydroxydopamine
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 3. The idiosyncratic drivers of correlated evolution
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 4. Cellular composition and the interpretation of candidate RNA readouts of trogocytosis in colorectal cancer
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 5. NeuroWeave-3D: Uncertainty-Aware Evidence Completion for Brain Tumor Segmentation with Missing MRI Modalities
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 6. RoDPAA: A Robust Dissimilarity-Based Principal Angle Analysis Framework for Multi-View Microbiome Data Integration
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 7. Differential Gene Expression and Functional Enrichment Analysis of Breast Tumor and Normal Tissue RNA-seq Data: A Reanalysis of GEO Dataset GSE210787
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 8. Classifying tumors from broad category to hierarchical molecular subtype: an interpretable hierarchical framework for precision oncology
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 9. A comparative transcriptomic framework across kidney organoid, assembloid, and transplantation models
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 10. Deducing splicing events from transcript sets with splicelogic
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 11. A trustworthy semantic knowledge network linking data-driven cell phenotypes to diseases and drugs
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 12. Computational Analysis of Antioxidant Effects on Stress Response Mechanisms in Candida albicans
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 13. SPaRTA: Spatial Reasoning in Text-to-SQL for Omics Analysis
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 14. Decision benchmarking of cryo-EM re-refinement
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 15. Reference-Guided De Novo Retrieval of 3D Chromatin Organizational Features with Representation Learning
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 16. 2D U-NET Deep Learning Architecture for Atherosclerotic Lesion Segmentation and Quantification
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 17. Decoding Cell-type Specific Gene Regulation with CellReg3D by Integrating DNA Large Language Models and 3D Genome Structure
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 18. SQANTI-evidence: isoform-resolved, evidence-tiered structural annotation of unannotated genomes from long-read RNA-seq
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 19. The Segmentome: a novel representation of the DNA methylome identified by a Bayesian HMM framework
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 20. GOParsimony: parsimonious saltation across the Gene Ontology digraph for efficient functional annotation
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 21. An end-to-end in silico framework for truth-based validation and regression testing of clinical genome sequencing pipelines, from simulated reads to reportable findings
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 22. Layer-Specific Source-Anchored Transfer Learning for Multi-Omics Survival Prediction in Younger Breast Cancer Patients
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 23. OncoSpot enables benchmarking of cancer spatial transcriptomics methods across tumor evolutionary modes
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 24. Deterministic DNA-first discovery reveals recurrent genomic architectures
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 25. Context, not contradiction: a pan-cancer framework for conforming and nonconforming co-expression programmes
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 26. BioTrajX: evaluating biological plausibility in single-cell trajectory inference
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 27. Omics-scale decoding of protein N-glycosylation using protein language model embeddings
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 28. Model-Agnostic Decomposition of the Difference in Mean Response Between Two Groups via Game-Theoretic Attribution with Minimum-Switching-Distortion Coupling
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 29. vafSOMA: Detecting cell-layer-fixed somatic mutations in plants
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 30. scPCIP: cross-species annotation of plant cell types with conserved gene programs
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 31. Spectral Adaptive Repositioning for Flow-Based Single-Cell Perturbation Modeling
- 1. MXP: Modular eXpandable framework for building bioinformatics Pipelines bioinformatics · Preprint 32. Genome-scale metabolic models reveal phylogenetic conservation of amino acid fermentation-linked metabolic traits in soil bacteria
Citation graph
Arrows run from the citing work to its reference. Only explicit source/provider reference lists are used. Incoming links cover this candidate window; this is not a global citation count.
No supported relationships are available in this snapshot. This does not mean that no relationships exist.
Collaborator network
Shared authorship within up to 200 candidate works (1 examined); up to 32 names shown. Names are matched as supplied, without verified person disambiguation. Shared credit does not necessarily establish personal collaboration.
Drag the background to pan. Select a node to open its record. Hover or focus for the title; numbers match the list.
Relationships as a list (6)
- Akushevich, I. 1 shared work Kovtun, M.
- Arbeev, K. 1 shared work Kovtun, M.
- Kovtun, M. 1 shared work Yashin, A.
- Akushevich, I. 1 shared work Arbeev, K.
- Akushevich, I. 1 shared work Yashin, A.
- Arbeev, K. 1 shared work Yashin, A.
Publication timeline
Publication years for these 32 related works; 0 have no source publication date. This is a discovery sample, not a measure of research output or growth.
2018 · 2 works
2026 · 29 works
- Cellular composition and the interpretation of candidate RNA readouts of trogocytosis in colorectal cancer
- NeuroWeave-3D: Uncertainty-Aware Evidence Completion for Brain Tumor Segmentation with Missing MRI Modalities
- RoDPAA: A Robust Dissimilarity-Based Principal Angle Analysis Framework for Multi-View Microbiome Data Integration
- Differential Gene Expression and Functional Enrichment Analysis of Breast Tumor and Normal Tissue RNA-seq Data: A Reanalysis of GEO Dataset GSE210787
- Classifying tumors from broad category to hierarchical molecular subtype: an interpretable hierarchical framework for precision oncology
- A comparative transcriptomic framework across kidney organoid, assembloid, and transplantation models
- Deducing splicing events from transcript sets with splicelogic
- A trustworthy semantic knowledge network linking data-driven cell phenotypes to diseases and drugs
- Computational Analysis of Antioxidant Effects on Stress Response Mechanisms in Candida albicans
- SPaRTA: Spatial Reasoning in Text-to-SQL for Omics Analysis
- Decision benchmarking of cryo-EM re-refinement
- Reference-Guided De Novo Retrieval of 3D Chromatin Organizational Features with Representation Learning
- 2D U-NET Deep Learning Architecture for Atherosclerotic Lesion Segmentation and Quantification
- Decoding Cell-type Specific Gene Regulation with CellReg3D by Integrating DNA Large Language Models and 3D Genome Structure
- SQANTI-evidence: isoform-resolved, evidence-tiered structural annotation of unannotated genomes from long-read RNA-seq
- The Segmentome: a novel representation of the DNA methylome identified by a Bayesian HMM framework
- GOParsimony: parsimonious saltation across the Gene Ontology digraph for efficient functional annotation
- An end-to-end in silico framework for truth-based validation and regression testing of clinical genome sequencing pipelines, from simulated reads to reportable findings
- Layer-Specific Source-Anchored Transfer Learning for Multi-Omics Survival Prediction in Younger Breast Cancer Patients
- OncoSpot enables benchmarking of cancer spatial transcriptomics methods across tumor evolutionary modes
- Deterministic DNA-first discovery reveals recurrent genomic architectures
- Context, not contradiction: a pan-cancer framework for conforming and nonconforming co-expression programmes
- BioTrajX: evaluating biological plausibility in single-cell trajectory inference
- Omics-scale decoding of protein N-glycosylation using protein language model embeddings
- Model-Agnostic Decomposition of the Difference in Mean Response Between Two Groups via Game-Theoretic Attribution with Minimum-Switching-Distortion Coupling
- vafSOMA: Detecting cell-layer-fixed somatic mutations in plants
- scPCIP: cross-species annotation of plant cell types with conserved gene programs
- Spectral Adaptive Repositioning for Flow-Based Single-Cell Perturbation Modeling
- Genome-scale metabolic models reveal phylogenetic conservation of amino acid fermentation-linked metabolic traits in soil bacteria
Semantic map
Model: all-minilm. Positions are a two-dimensional approximation of embedding similarity; proximity is not a citation or proof of agreement. Results come from the snapshot’s candidate window.
No current, compatible embeddings are available for related works in this snapshot. A semantic map appears after background embedding and snapshot generation.