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li, f.

Publications and source records attributed to li, f..

4 recordsLinked to original sources

Diet-Seg: Dynamic Hardness-Aware Learning for Enhanced Brain Tumor Segmentation

Accurate brain tumor segmentation in magnetic resonance imaging (MRI) remains a critical challenge due to complex tumor heterogeneity, fuzzy boundaries, and significant inter-patient variability. In this study, we propose Diet-Seg (Difficulty-Informed Edge-enhanced Tiny Segmentation), a novel segmentation framework that integrates entropy-based pixel-wise hardness estimation into the training process via a dynamic learning rate modulation strategy. Specifically, we employ a pretrained 3D U-Net information model to quantify voxel-level prediction uncertainty, which is then used to guide the optimization of the main segmentation model. Diet-Seg is further enhanced by an RWKV-based U-Net backbone to capture global spatial dependencies and an EdgeNet module to preserve tumor boundaries through edge-aware fusion. Extensive experiments on the BraTS2018-2021 datasets demonstrate that Diet-Seg consistently outperforms state-of-the-art baselines across all tumor subregions. Notably, Diet-Seg achieves superior generalization when trained on one dataset and validated across multiple years. Moreover, the hardness maps offer interpretable insights into segmentation difficulty, potentially enabling human-AI collaboration in clinical practice. These results highlight the promise of entropy-aware training as a general strategy for robust and efficient medical image segmentation. The work is implemented in the open-source project available on GitHub (https://github.com/ManuelTurner/Diet-Seg)

bioinformatics↗

Mitochondrial DNA Release and Activation of the cGAS-STING Pathway in Lethal Stx12 Knockout Mice

STX12 (syntaxin12 or syntaxin13), a member of the SNARE protein family, plays a crucial role in intracellular vesicle transport and membrane fusion. Our previous research has demonstrated that Stx12 knockout mice exhibit perinatal lethality with iron deficiency anemia. Despite its importance, the comprehensive physiological and pathological mechanism of STX12 remain largely unknown. Here, we uncover that STX12 deficiency causes the depolarization of mitochondrial membrane potential in zebrafish embryos and mouse embryonic fibroblasts. Additionally, the loss of STX12 decreases levels of mitochondrial complex subunits, accompanying mitochondrial DNA (mtDNA) release and activating cGAS-STING pathway and Type I interferon pathway in the lung tissue of Stx12-/- mice. Additionally, we have observed a substantial increase in cytokines and neutrophil infiltration within the lung tissues of Stx12 knockout mice, indicating a severe inflammation, which could be a contributing factor for Stx12-/-mortality. Various interventions have failed to rescue the lethal phenotype, suggesting that systemic effects may contribute to lethality. Further research is warranted to elucidate potential intervention strategies. Overall, our findings uncover the critical role of STX12 in maintaining mitochondrial function and mtDNA stability in pulmonary cells, and reveal that STX12 depletion results in pulmonary mtDNA release and activates mtDNA-dependent innate immunity.

molecular biology↗

Identification roles of NFE2L3 in Digestive System Cancers

(1) BackgroundThe morbidity and mortality rate of Digestive System Cancers (DSC) continue to threaten human lives and health. Nuclear factor erythroid 2-like protein 3 (NFE2L3) is associated with the development, growth, and progression of multiple cancers. Nevertheless, the clinical value and underlying mechanisms of NFE2L3 in DSC remains unknown. This study aimed to clarify the possibilities of NFE2L3 as a novel biomarker in DSC. (2) MethodsWe obtained the data of NFE2L3 in cancers from database to evaluate the expression level and clinical value of NFE2L3 in DSC, and to explore underlying mechanism and biological functions of NFE2L3 in DSC. (3) ResultsNFE2L3 expression is up-regulated in DSC and have both prognostic and diagnostic value. NFE2L3 contributes to oncogenesis through a variety of mechanisms. In vitro experiment showed that NFE2L3 stimulated the proliferation and migration ability of gastric cancer cells. (4) ConclusionOur study confirms the clinical applicability of NFE2L3 as a promising biomarker for DSC.

molecular biology↗

Molecular response of whitefly to the wild tomato Solanum habrochaites

The whitefly Bemisia tabaci (Gennadius) causes severe damage to cultivated tomato in many regions of the world through direct feeding and indirectly through transmission of plant viruses. Field observations show that B. tabaci is rarely infested the non-host plants such as the wild tomato Solanum habrochaites; however, the molecular mechanism involved in the recognition of wild plant odors is still unclear. In this study, we assessed the effects of S. habrochaites on the survival, fecundity, and egg hatchability of the Mediterranean (MED) species of B. tabaci. Expression and splicing of stress-response genes in whitefly exposed to S. habrochaites was analyzed using RNA-sequencing data and alternative splicing analysis. These results indicated that the S. habrochaites treatment can induce the expression of environmental stress genes in B. tabaci. This study may help us to a better understanding of the molecular mechanisms involved in the olfactory recognition of non-host volatiles particularly wild tomato relative. Furthermore, the findings of this study may provide excellent chances of finding a suitable antagonist of eco-friendly properties which can block the perception of chemosensory signals. Thereby, the feeding behavior and food preferences of B. tabaci can be manipulated and thus insect populations can eventually be controlled.

ecology↗