Biology subjects

dos Santos, A. L.

Publications and source records attributed to dos Santos, A. L..

3 recordsLinked to original sources

bioRxiv2024

SlAN1 is a limiting factor for the light-dependent anthocyanin accumulation in fruit tissues of purple tomato

Anthocyanins are specialized plant metabolites with significant dietary value due to their anti-inflammatory properties. Research indicates that dietary intake of these phenolic compounds contributes to preventing various chronic diseases. As the most consumed vegetable worldwide, tomato (Solanum lycopersicum) is an excellent candidate for anthocyanin-enrichment strategies. In tomato, activation of anthocyanin biosynthesis is light-dependent, but this mechanism has yet to be entirely characterized. We investigated the role of light in anthocyanin biosynthesis in fruits of the purple tomato, which is a near-isogenic line (NIL) derived from wild accessions into cv. Micro-Tom (MT). MT-Aft/atv/hp2 starts accumulating anthocyanin early during fruit development but is restricted to the peel (exocarp and epicarp). Manipulating light incidence in different fruit tissues determined that the absence of anthocyanin accumulation in the flesh results from the sun-blocking effect of the cyanic epicarp on the mesocarp, thus preventing light from penetrating deeper into the fruit. Transcriptional analyses of the fruit peel and flesh revealed that the bHLH transcription factor SlAN1 (Solyc09g065100) is the limiting factor for light-dependent anthocyanin accumulation in both tissues. This research enhances our comprehension of the genetic and environmental regulation of anthocyanin accumulation in fruit tissues, offering valuable insights into plant breeding for human nutrition. HighlightThe expression of the SlAN1 gene is activated in response to light signals, and it is the limiting factor for anthocyanin pigmentation in tomato fruit tissues.

plant biology↗

bioRxiv2022

Arctic phytoplankton spring bloom diversity across the marginal ice zone in Baffin Bay

Phytoplankton under-ice blooms have been recently recognized as an important Arctic phenomenon for global primary production and biogeochemical cycling. Drastic sea-ice decline in both extension and thickness enables the development of early blooms, sometimes hundreds of kilometers beneath the pack ice. Baffin Bay is a semi-enclosed sea where Arctic and North Atlantic water masses interact. It is totally covered by sea-ice by March and ice-free by August/September. In the present work, we investigated the phytoplankton community structure across the marginal ice zone between the ice-free, Atlantic-influenced, east and the ice-covered, Arctic-influenced, west Baffin Bay using 18S rRNA high-throughput amplicon sequencing, flow cytometry cell counting and numerous environmental and biological data collected and compiled in the scope of the Green Edge project. Sampling was performed during June-July 2016 in a total of 16 stations with around 6 depths each. Stations were clustered into "Under Ice" (UI), "Marginal Ice Zone" (MIZ) and "Open Water" (OW) on the basis of its sea ice cover upon sampling. Phytoplankton community structure was analyzed by 18S rRNA metabarcoding with the microdiversity approach. The UI sector was characterized by a shallow nitracline, high pico-phytoplankton abundance and a shared dominance between Micromonas and Phaeocystis in the 0.2-3 {micro}m size fraction, as well as an increased contribution of Cryptophyceae and non-diatom Ochrophyta in the 3-20 {micro}m size fraction. Several amplicon sequence variants (ASVs) were flagged as indicator for the UI+MIZ sector group, including known ice-associated taxa such as the diatoms Melosira arctica and Pseudo-nitzschia seriata, but also specific ASVs assigned to the green alga Micromonas polaris and the cryptophyte Falcomonas daucoides, the silicoflagellate Dictyocha speculum, one member of the uncultivated MOCH-2 group, and a Pterosperma sp. (green algae) rarely seen in other metabarcoding datasets, including from the Arctic. The OW sector harbored a community adapted to a nutrient-depleted/high light environment, with a significant contribution of the haptophytePhaeocystis pouchetii and big centric diatoms, including several Thalassiosira species.

microbiology↗

bioRxiv2020

Taxonomic reassignment of Pseudohaptolina birgeri comb. nov. (Haptophyta)

The haptophyte genus Pseudohaptolina (formerly Chrysochromulina clade B1-3) currently harbors two species: Pseudohaptolina arctica and Pseudohap-tolina sorokinii. In addition, Chrysochromulina birgeri is expected to belong to this genus due to its morphological similarity to P. sorokinii, but has not yet been genetically characterized. A strain belonging to Pseudohaptolina was brought into culture from Arctic waters, characterized by 18S and 28S rRNA gene sequencing as well as optical and transmission electron microscopy, and deposited in the Roscoff Culture Collection with the code RCC5270. Molecular and morphological data from RCC5270 were compared with those from previously described Pseudohaptolina and Pseudohaptolina-like species. Strain RCC5270 showed strong phylogenetic affinity to P. sorokinii, but TEM observations showed that RCC5270 possesses three types of organic body scale, rather than two as originally described in P. sorokinii. We found that the occurrence of three scale types is likely to have been overlooked in the original descriptions of both P. sorokinii and C. birgeri. We also found that environmental metabarcodes identical to the sequence of RCC5270 were abundant in the location from which C. birgeri was initially described (Gulf of Finland). We conclude that P. sorokinii and C. birgeri are conspecific and P. sorokinii is therefore synonymous with C. birgeri. Based on its phylogenetic placement and nomenclatural priority we propose the new combination Pseudohaptolina birgeri and emend the description of this species.

microbiology↗