Zipunnikov, V. | bioRxiv Science

bioRxiv2020

Scale-invariant time registration of 24-hour accelerometric rest-activity profiles and its application to human chronotypes

By collecting data continuously over 24 hours, accelerometers and other wearable devices can provide novel insights into circadian rhythms and their relationship to human health. Existing approaches for analyzing diurnal patterns using these data, including the cosinor model and functional principal components analysis, have revealed and quantified population-level diurnal patterns, but considerable subject-level variability remained uncaptured in features such as wake/sleep times and activity intensity. This remaining informative variability could provide a better understanding of chronotypes, or behavioral manifestations of ones underlying 24-hour rhythm. Curve registration, or alignment, is a technique in functional data analysis that separates "vertical" variability in activity intensity from "horizontal" variability in time-dependent markers like wake and sleep times; this data-driven approach is well-suited to studying chronotypes using accelerometer data. We develop a parametric registration framework for 24-hour accelerometric rest-activity profiles represented as dichotomized into epoch-level states of activity or rest. Specifically, we estimate subject-specific piecewise linear time-warping functions parametrized with a small set of parameters. We apply this method to data from the Baltimore Longitudinal Study of Aging and illustrate how estimated parameters give a more flexible quantification of chronotypes compared to traditional approaches.

physiology↗

bioRxiv2018

Accelerometry data in health research: challenges and opportunities. Review and examples

Wearable accelerometers provide detailed, objective, and continu-ous measurements of physical activity (PA). Recent advances in technology and the decreasing cost of wearable devices led to an explosion in the popula-rity of wearable technology in health research. An ever increasing number of studies collect high-throughput, sub-second level raw acceleration data. In this paper we discuss problems related to the collection and analysis of raw acce-lerometry data and provide insights into potential solutions. In particular, we describe the size and complexity of the data, the within- and between-subject variability and the effects of sensor location on the body. We also provide a short tutorial for dealing with sampling frequency, device calibration, data labeling and multiple PA monitors synchronization. We illustrate these po-ints using the Developmental Epidemiological Cohort Study (DECOS), which collected raw accelerometry data on individuals both in a controlled and the free-living environment.

epidemiology↗

bioRxiv2017

Patterns of sedentary and active time accumulation are associated with mortality in US adults: The NHANES study

PurposeSedentary behavior has become a public health pandemic and has been associated with a variety of comorbidities including cardiovascular disease, type 2 diabetes, and some cancers. Previous studies have also shown that excessive amount of sedentary behavior is associated with all-cause mortality. However, no studies investigated whether patterns of sedentary and active time accumulation are associated with mortality independently of total sedentary and total active times. This study addresses this question by i) comparing several analytical ways to quantify patterns of both sedentary and active time accumulation through metrics of fragmentation of objectively-measured physical activity and ii) exploring the association of these metrics with all-cause mortality in a nationally representative US sample of elderly adults.\n\nMethodsThe accelerometry data of 3400 participants aged 50 to 84 in the National Health and Nutrition Examination Survey 2003-2006 cohorts were analyzed. Ten fragmentation metrics were calculated to quantify the duration of sedentary and active bouts: average bout duration, Gini index, average hazard, between-state transition probability, and the parameter of power law distribution. The association of these fragmentation metrics with all-cause mortality followed through December 31, 2011 was assessed with survey-weighted Cox proportional hazard models.\n\nResultsIn models adjusted for age, sex, race/ethnicity, education, body mass index, common comorbidities, and total sedentary/active time, four fragmentation metrics were associated with lower mortality risk: average active bout duration (HR=0.72 for 1SD increase, 95% CI = 0.590.88), Gini index for active bouts (HR = 0.75, 95% CI = 0.64-0.86), the parameter of power law distribution for sedentary bouts (HR = 0.75, 95% CI = 0.63-0.90), and sedentary-to-active transition probability (HR = 0.77, 95% CI = 0.61-0.96), and four fragmentation metrics were associated with higher mortality risk: the active-to-sedentary transition probability (HR = 1.40, 95% CI=1.23-1.58), the parameter of power law distribution for active bouts (HR = 1.33, 95% CI = 1.16-1.52), average hazard for durations of active bouts (HR = 1.32, 95% CI = 1.18-1.48), and average sedentary bout duration (HR =1.07, 95% CI = 1.01-1.13). After sensitivity analysis, average sedentary bout duration and sedentary-to-active transition probability became insignificant.\n\nConclusionLonger average duration of active bouts, a lower probability of transitioning from active to sedentary behavior, and a higher normalized variability of active bout durations were strongly negatively associated with all-cause mortality independently of total active time. A larger proportion of longer sedentary bouts were positively associated with all-cause mortality independently of total sedentary time. The results also suggested a nonlinear association of average active bout duration with mortality that corresponded to the largest risk increase in subjects with average active bout duration less than 3 minutes.

epidemiology↗