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Zaghen, S.

Publications and source records attributed to Zaghen, S..

2 recordsLinked to original sources

Reprogramming Yarrowia lipolytica metabolism for efficient synthesis of itaconic acid from flask to semi-pilot scale

Itaconic acid is an emerging platform chemical with extensive applications. It is currently produced by Aspergillus terreus through biological fermentation. However, A. terreus is a fungal pathogen and needs additional morphology controls, and therefore the production remains problematic. Here, we reprogrammed the GRAS yeast Yarrowia lipolytica metabolism for competitive itaconic acid production. After redirecting the flux of lipid accumulation as carbon sink, we evaluated itaconic acid production both inside and outside the mitochondria, and fine modulated its synthetic pathway. We then mimicked the regulation of nitrogen limitation in nitrogen replete conditions through down regulation of IDH by weak promoter changing, RNAi, or CRISPRi. Ultimately, we optimized fermentation parameters for fed-batch cultivations, and produced itaconic acid with titres of 130.1 g/L in 1L bioreactors and 94.8 g/L in a 50L bioreactor on semi-pilot scale. Our finds provide effective approaches for harnessing GRAS microorganism for competitive industrial itaconic acid production.

bioengineering↗

Abolishing storage lipids induces protein misfolding and stress responses in Yarrowia lipolytica

Summary/AbstractYarrowia lipolytica naturally saves carbon excess as storage lipids. Engineering efforts allow redirecting the high precursor flux required for lipid synthesis towards added-value chemicals such as polyketides, flavonoids, and terpenoids. To redirect precursor flux from storage lipids to other products, four genes involved in triacylglycerol and sterol ester synthesis (DGA1, DGA2, LRO1, ARE1) can be deleted. To elucidate the effect of the deletions on cell physiology and regulation, we performed chemostat cultivations under carbon and nitrogen limitation, followed by transcriptome analysis. We found that storage lipid-free cells show an enrichment of the unfolded protein response, and several biological processes related to protein refolding and degradation are enriched. Additionally, storage lipid-free cells show an altered lipid class distribution with an abundance of potentially cytotoxic free fatty acids under nitrogen limitation. Our findings not only highlight the importance of lipid metabolism on cell physiology and proteostasis, but can also aid the development of improved chassy strains of Y. lipolytica for commodity chemical production. HighlightsO_LIPhysiological and transcriptomic characterization of storage lipid free (Q4) strain C_LIO_LIStorage lipid free strain shows an increased free fatty acid fraction on nitrogen limitation C_LIO_LIStorage lipid free strain is more sensitive towards fatty acid supplementation C_LIO_LIUnfolded protein response, chaperones, and ubiquitin are enriched in the storage lipid free strain C_LI

systems biology↗