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Yoneya, K.

Publications and source records attributed to Yoneya, K..

4 recordsLinked to original sources

Microscale nonrandomness revisited: An overlooked predictor of ecological change

Abrupt ecological transitions have driven the development of early warning signal metrics that track how ecological systems respond as external conditions gradually change and systems approach transitions between states. However, their generality and applicability remain uncertain, particularly for short-term ecological dynamics that can occur without directional external change. To address this gap, we propose a general framework based on the hypothesis that microscale nonrandomness, quantified from frequency distributions or spatial patterns, predicts subsequent short-term rates of change in populations and interactions, as well as current macroscale ecosystem states. We applied the framework to four datasets: time series from an incubation experiment of phytoplankton-parasitic chytrid interactions; spatiotemporal field observations of leaf beetles on willow trees and aphids in a crop system; and spatial snapshot data linking soil surface characteristics with aboveground and soil ecosystem properties in a forest vegetations-soil system. We quantified microscale nonrandomness using Morisita I_{delta} from frequency distributions and Moran's I and SADIE from spatial patterns. Across all systems, models incorporating microscale nonrandomness metrics consistently showed greater cross-validated predictive performance than those based on macroscale variables or spatial averages alone. Although their relative performance varied among systems, frequency-based metrics performed as well as or better than spatially explicit metrics in some cases. The consistent improvement across contrasting systems supports the broad applicability of this framework, including under limited data conditions. This framework broadens ecological forecasting to short-term, continuous dynamics beyond those associated with directional environmental change.

ecology↗

Advancing marker-gene-based methods for prokaryote-mediated multifunctional redundancy: exploring random and nonrandom extinctions in a watershed

Multifunctional redundancy, the extent of loss in multiple ecosystem functions with decreasing biodiversity, stands as a crucial index for evaluating ecosystem resilience to environmental changes. We aimed to refine a marker-gene-based methodology for quantifying multifunctional redundancy in prokaryotic communities. Using PICRUSt2, we predicted KEGG orthologs (KOs) for each Amplicon Sequence Variant (ASV), assessed community-wide KO richness, and validated predictions against experimentally quantified phenotypic multifunctionality. Additionally, we introduced a refined regression on ASV richness-KO richness curves, providing a reliable estimate of the power-law exponent within computational time constraints, serving as the multifunctional redundancy index. Incorporating various non-random extinction scenarios alongside a random one allowed us to quantify estimate variations between scenarios, providing conservative estimates of multifunctional redundancy. Applied to Lake Biwa and four of its inlet rivers, the refined methodology unveiled spatio-temporal variations in multifunctional redundancy. Our analysis demonstrated lower redundancy in Lake Biwa compared to rivers, aiding in prioritizing conservation targets and inferring distinct community assembly processes. Future directions include a deeper exploration of KO composition information for detailed multifunctionality quantification and the refinement of extinction scenarios. This study demonstrates the promising integration of bioinformatic functional prediction and modeling biodiversity loss, offering a valuable tool for effective ecosystem management.

ecology↗

Non-destructive collection and metabarcoding of arthropod environmental DNA remained on a terrestrial plant

For the conservation and community ecology of arthropods and pest controls on terrestrial plants, survey of arthropods is a crucial step. However, efficient surveys are hindered by challenges in collecting small arthropods, and identifying the species. Environmental DNA (eDNA)-based techniques, such as eDNA metabarcording, help overcome these difficulties in aquatic systems. To apply eDNA metabarcording to terrestrial arthropods, we developed a non-destructive eDNA collection method. In this method, termed "plant flow collection," we spray distilled or tap water, or use rainfall, which eventually flows over the surface of the plant, and is collected in a container that is set at the plant base. DNA is extracted from the filtered water samples and a DNA barcode region, such as cytochrome c oxidase subunit I (COI) gene, of the extracted DNA is amplified and sequenced using a high-throughput sequencer. We identified more than 38 taxonomic groups of arthropods at the family level, of which 7 were visually observed or artificially introduced species, whereas the other 31 groups of arthropods, including 18 species, were not observed in the visual survey. Put together, these results show that the developed method is effective for detecting the presence of arthropods in plants.

ecology↗

Occurrence of diamondback moths Plutella xylostella and their parasitoid wasps Cotesia vestalis in mizuna greenhouses and their surrounding areas

We observed the seasonal occurrence of diamondback moth (DBM) larvae, Plutella xylostella (Lepidoptera: Plutellidae), and their native parasitoid wasps, Cotesia vestalis (Hymenoptera: Braconidae), on mizuna plants, Brassica rapa var. laciniifolia (Brassicales: Brassicaceae), in three commercial greenhouses and on wild cruciferous weeds, Rorippa indica (Brassicales: Brassicaceae), in the surrounding area in the Miyama countryside in Kyoto, Japan. The occurrences of DBM larvae in greenhouses followed their occurrence in the surrounding area: however, some occurrences of DBM in greenhouses took place when the DBM population in the surrounding was rather low. This suggests that the occurrence of DBM in greenhouses cannot always be explained by its seasonal occurrence in the surrounding areas. The occurrence of C. vestalis followed that of DBM larvae in mizuna greenhouses and in the surrounding areas. No C. vestalis were recorded in greenhouses when DBM was not present. Cotesia vestalis females preferred volatiles emitted from DBM-infested mizuna plants to those from uninfested conspecifics under laboratory conditions. Natural HIPVs (herbivory-induced plant volatiles) emitted from DBM-infested mizuna plants in greenhouses probably attracted C. vestalis from the surrounding area to cause their co-occurrence.

ecology↗