bioRxiv Science⌕ Search

Biology subjects

Yip, P.

Publications and source records attributed to Yip, P..

8 recordsLinked to original sources

Strategic rejection of newborns is associated with substantially extended lifespan in parents and increased lifespan in well-reared offspring in owl monkeys

Parental rejection of apparently healthy newborns is widely classified as a behavioural abnormality in captive primate colonies, yet its biological significance remains unclear. In owl monkeys (Aotus nancymaae), parental rejection, defined here as cessation of nursing leading to rescue nursery rearing, is typically lethal for offspring and is transmitted across generations despite reducing offspring survival. Here, we tested whether parental rejection is associated with lifespan and reproductive differences in parents and their surviving offspring. We analysed long-term demographic records from a captive colony of 962 individuals and compared survival and reproductive outcomes between rejector and non-rejector parents using survival analyses and regression-based models. Parents who rejected offspring lived significantly longer than non-rejectors, with an average lifespan advantage of approximately 4-4.5 years in both males and females. This survival difference was concentrated during the prime reproductive period (6-20 years). Well-reared offspring of rejector parents also lived longer than offspring of non-rejectors, with a mean lifespan difference of 1.26 years. Rejector parents produced more offspring overall, but this difference was explained by extended lifespan rather than higher reproductive output per year. Analyses stratified by rejection timing showed no longevity advantage in first-birth rejectors, whereas parents rejecting later-born offspring exhibited longer survival. Together, these findings show that parental rejection is associated with longer lifespan in parents and in their well-reared offspring under captive conditions. These patterns are consistent with altered allocation of parental investment under energetic or environmental stress.

evolutionary biology↗

JUNO-Coated Beads as a Functional Assay to Capture and Characterize Fertilization-Competent Human Sperm

Study questionCan human fertilization-competent spermatozoa be captured through their ability to bind the oocyte receptor JUNO? Summary answerJUNO-coated beads, which mimic the oocyte geometry, selectively bound acrosome-reacted spermatozoa with intact DNA, revealing that vitrification preserves functional sperm binding while slow cryopreservation increases non-specific interactions. What is known alreadyIt is well established that sperm must undergo the acrosome reaction and expose the receptor IZUMO1 on the sperm head to bind specifically to JUNO on the oolemma. Studying the spermatozoa that reaches and engages with the oolemma, however, remains highly challenging due to the technical difficulty of recovering these sperm at the site of molecular interaction. Bead-based models that content oocyte receptors have therefore emerged as a powerful approach to functionally assess sperm-oocyte interactions, with promising applications for evaluating sperm quality. Study design, size, durationThis was a cross-sectional experimental study including 21 semen donors of reproductive age recruited between January 2023 and June 2025. The JUNO-bead-based model was first validated using fresh human semen samples to establish optimal sperm concentration and co-incubation time. Subsequently, two semen preservation methods, slow freezing and rapid freezing, were compared with respect to sperm binding capacity to JUNO-coated beads, acrosomal status, and DNA integrity. Finally, donors were classified according to sperm binding capacity. Participants/materials, setting, methodsRecombinant JUNO protein was expressed and purified in Drosophila melanogaster S2 cells, and protein-bead conjugation was verified by immunochemistry. Human semen samples were obtained from donors aged 19-42 years, including both fresh ejaculates and cryopreserved samples. Sperm binding capacity, acrosome reaction, and DNA fragmentation were assessed using widefield fluorescence microscopy and flow cytometry. Specificity of sperm-bead binding was evaluated with anti-IZUMO1 monoclonal antibodies. Main results and the role of chanceHuman JUNO recombinant protein was successfully conjugated to oocyte-sized beads to generate a sperm-binding assay mimicking the geometry of the oocyte and experimental conditions of the in vitro fertilization. Human sperm bound specifically to JUNO-beads in a dose- and time-dependent manner, with highly significant differences compared to control beads (p [&le;] 0.0001). Vitrified-based cryopreserved sperm displayed higher binding to JUNO-beads than conventionally cryopreserved samples (p [&le;] 0.0001). Binding was significantly inhibited by an anti-IZUMO1 (2.5 ug/mL) antibody that blocks specifically the IZUMO1-JUNO interaction in vitrified samples (p [&le;] 0.01), but not in conventionally cryopreserved sperm. Sperm bound to JUNO-beads were predominantly acrosome-reacted in both preservation methods; however, vitrified samples retained higher DNA integrity compared with conventionally cryopreserved samples. The assay proved robust across multiple donors and ejaculates, allowing classification into low- and high-binding capacity (LBC and HBC) groups. Pearson correlation analyses revealed only weak associations between total sperm motility and bead-binding parameters (|r| < 0.27), indicating negligible or absent linear relationships. Large-scale dataN/A Limitations, reasons for cautionThis study was performed in vitro, and the number of semen donors was limited. As all participants were healthy donors, the population represents a selected fertile subpopulation. Further studies using samples from diverse patient populations are required to validate the potential of the assay as a predictor of male fertility. Wider implications of the findingsThis study positions the JUNO-bead binding assay as a powerful functional model to investigate the biology of fertilization-competent sperm. By selectively capturing spermatozoa that have undergone the acrosome reaction and maintain DNA integrity, the model provides a unique experimental platform to study the molecular determinants of fertilization, to refine the selection of sperm for assisted reproduction, and to identify potential targets for novel contraceptive strategies. Beyond preservation protocols, these findings provide new functional evidence that sperm preservation method directly influences the molecular integrity required for fertilization, supporting vitrification as a superior approach over slow freezing. Moreover, the JUNO-bead assay emerges as a sensitive tool to reveal differences in sperm quality that are not captured by standard semen analysis, with potential applications in the optimization of assisted reproduction and fundamental research on the mechanisms that define the fertilizing spermatozoon. Study funding/competing interest(s)This work is part of the project PID 2020-114109GB-I00 funded by MCIN/AEI/10.13039/501100011033 to M.J.M. This work was also supported, in part, by the Gates Foundation [INV-055841]. The conclusions and opinions expressed in this work are those of the author(s) alone and shall not be attributed to the Foundation. Under the grant conditions of the Foundation, a Creative Commons Attribution 4.0 License has already been assigned to the Author Accepted Manuscript version that might arise from this submission. Protein production and biophysics infrastructure is supported by funding from Canada Foundation for Innovation John R Evans Leaders Fund (CFI-JELF) to J.E.L. The authors declare no conflict of interest. Lay summaryIdentifying and studying the sperm cell that is truly capable of fertilizing an egg is a major challenge, because this process occurs precisely when the sperm binds to the egg and penetrates it. In this study, we developed a model based on microscopic beads that mimic the shape of the egg and are coated with JUNO, a receptor essential for sperm-egg recognition. These JUNO-beads capture only those sperm cells with the right molecular and cellular properties to bind to the egg membrane and enable fertilization. Using this system, we compared sperm samples preserved through slow freezing (cryopreservation) or rapid freezing (vitrification). We observed that vitrified samples retained a higher proportion of sperm with fertilizing characteristics, sperm that had undergone the acrosome reaction but maintained intact DNA. Furthermore, by applying this model to samples from different donors, we were able to classify them according to their high or low binding capacity to JUNO-beads. Overall, this approach provides a new way to "capture" and evaluate fertilizing sperm, offering potential applications for improving sperm quality assessment in assisted reproduction, and a valuable tool for studying the defining features of the fertilizing sperm cell.

cell biology↗

Maternal rejecting of newborns is epigenetic, intergenerationally transmitted and associated with altered miRNAs expression in owl monkeys.

Spontaneous maternal rejection of offspring is a considered a behavioural pathology affecting human and non-human primates, often with lethal consequences for newborns, yet it is widespread and pervasive across taxa, induced by stress or stress vulnerability. In some species, events of rejection can trigger chains of rejection which replicate themselves through generations. In this study we hypothesized that rejecting behaviours in owl monkeys are triggered and epigenetic in nature, transmitted to descendants, and their manifestation is associated with altered miRNA expression. Analysis of multi-generational records revealed that individuals who experienced rejection in infancy were 1.9 times more likely to reject their own offspring compared to controls, confirming its triggered nature. Transmission appears induced by experience rather than solely explained by genetic relatedness, as non-rejected full siblings showed no increased rejection tendency. Transcriptomic analysis identified distinct microRNA signatures associated with epigenetically induced rejecting behaviours. In rejected adults that become rejectors of their own offspring, mml-miR-1296, involved in lipid metabolism was significantly downregulated. In the naive daughters of rejected-rejectors, upregulated mml-miR-125b-5p, previously identified as biomarker in humans exposed to early life trauma that also suffered behavioural pathology, was identified. In summary, these findings confirm the epigenetic nature of spontaneous rejecting, with robust intergenerational transmission, and accompanied by alteration of epigenetic marks across generations in owl monkeys.

animal behavior and cognition↗

Parental rejection is associated with intergenerational inheritance of reduced survival, altered behaviours and miRNAs in Owl Monkeys

Parental rejection in captive primates represents severe early-life stress, yet intergenerational effects remain poorly characterised. We investigated spontaneous rejection in owl monkeys (Aotus nancymaae) across two generations using demographic records (n=1,372), behavioural observations (n=65), and blood miRNA profiling (n=47). Rejected individuals showed 51% reduced lifespan, decreased probability of reaching reproductive age, and increased morbidity throughout life. Critically, well-reared offspring of rejected parents exhibited similar reductions in survival to reproductive age and lifespan. Rejected adults displayed heightened fearfulness and aggression with reduced paternal care; offspring showed decreased locomotion and altered stress responses. Blood miRNA analysis revealed significant upregulation of mml-miR-30a-5p in female offspring-a miRNA associated with early-life stress and behavioural disorders in humans. These findings demonstrate intergenerational transmission of rejection effects on fitness and behaviour, with preliminary evidence suggesting epigenetic mechanisms are associated with this transmission, though multiple pathways likely operate.

animal behavior and cognition↗

Dynamic Data Independent Acquisition Mass Spectrometry with Real-Time Retrospective Alignment

We report a data independent acquisition (DIA) strategy that dynamically adjusts the tandem mass spectrometry (MS/MS) windows during the chromatographic separation. The method focuses MS/MS acquisition on the most relevant mass range at each point in time - improving the quantitative sensitivity by increasing the time spent on each DIA window. We demonstrate an improved lower limit of quantification, on average, without sacrificing the number of peptides detected.

bioinformatics↗

SPACA6 structure reveals a conserved superfamily of gamete fusion-associated proteins

SPACA6 is a sperm-expressed surface protein that is critical for gamete fusion during mammalian sexual reproduction. Despite this fundamental role, little is known about how SPACA6 specifically functions. We elucidated the crystal structure of SPACA6 at 2.2-[A] resolution, revealing a two-domain protein containing a four-helix bundle and Ig-like {beta}-sandwich connected via a quasi-flexible linker. Based on the structural analysis, we propose SPACA6 is a founding member of a superfamily of gamete fusion-associated proteins, herein dubbed the IST superfamily. The IST superfamily is defined structurally by its distorted four-helix bundle and a pair of disulfide-bonded CXXC motifs. A structure-based search of the AlphaFold human proteome identified more protein members to this superfamily; remarkably, many of these proteins are linked to gamete fusion. The SPACA6 structure and its connection to other IST-superfamily members provide a missing link in our knowledge of mammalian gamete fusion. Significance StatementSPACA6 is a human sperm protein vital for the fusion of gametes, though its exact function remains a mystery. We present the first solved structure of SPACA6: a two-domain fold comprised of an Ig-like domain and a distorted four-helix bundle. Dali searches of the PDB and AlphaFold reveal a family of structurally related proteins, several of which are also known to play a role in gamete fusion; as such, SPACA6 is a founding member of a conserved protein superfamily, dubbed the IST superfamily. Evolutionary analysis to ascertain functionally relevant structural elements in SPACA6 show a conservation of flexibility between the two domains and several conserved surfaces that could function as protein-protein interfaces.

developmental biology↗

Alleviation of neuropathic pain by over-expressing a soluble colony-stimulating factor 1 receptor

In this study, we aim to alleviate neuropathic pain by suppressing microgliosis and macrophage accumulation, which is achieved by over-expressing a non-functional soluble colony-stimulating factor 1 receptor using adeno-associated virus 9 vectors (AAV9/sCSF1R). AAV9/sCSF1R and AAV9/GFP were intrathecally administered into mouse lumbar spine. Two weeks later, these mice underwent partial sciatic nerve ligation to induce neuropathic pain. GFP and sCSF1R were highly expressed in dorsal root ganglia (DRG) and spinal cords in AAV9-injected mice. Nerve ligation alone or pre-treated with AAV9/GFP led to significant microgliosis in the lumbar spinal cords and macrophage accumulation in DRG and sciatic nerves. In nerve-ligated mice pre- treated with AAV9/sCSF1R the microglia densities in the dorsal and ventral horns and macrophage densities in DRG and sciatic nerves were significantly lower compared to nerve-ligated mice pre-treated with AAV9/GFP. Behavioural tests showed that nerve-ligated mice pre- treated with AAV9/sCSF1R had a significantly higher paw withdrawal threshold, indicating the alleviation of neuropathic pain. The results implicate that viral vector-mediated expression of sCSF1R may represent a novel strategy in long-term alleviation of neuropathic pain.

neuroscience↗

TET2 regulates the neuroinflammatory response in microglia

Epigenetic mechanisms regulate distinct aspects of the inflammatory response in various immune cell types. Despite the central role for microglia, the resident macrophages of the brain, in neuroinflammation and neurodegeneration little is known about their epigenetic regulation of the inflammatory response. Here, we show that Ten-eleven translocation 2 (TET2) methylcytosine dioxygenase expression is increased in microglia upon stimulation with various inflammogens through a NF-{kappa}B-dependent pathway. We found that TET2 regulates early gene transcriptional changes that lead to early metabolic alterations, as well as a later inflammatory response independently of its 5mC oxidation activity at the affected genes. We further show that TET2 regulates the proinflammatory response in microglia induced by intraperitoneal injection of LPS in vivo. We observed that microglia associated to amyloid {beta} plaques, recently defined as disease-associated microglia, expressed TET2 in brain tissue from individuals with Alzheimers disease (AD) and in 5xFAD mice. Collectively, our findings show that TET2 plays an important role in the microglial inflammatory response, and suggest TET2 as a potential target to combat neurodegenerative brain disorders.

neuroscience↗