bioRxiv Science⌕ Search

Biology subjects

Yeh, P.

Publications and source records attributed to Yeh, P..

2 recordsLinked to original sources

Estimating Microbial Population Data from Optical Density

The spectrophotometer has been used for decades to measure the density of bacterial populations as the turbidity expressed as optical density - OD. However, the OD alone is an unreliable metric and is only proportionately accurate to cell titers to about an OD of 0.1. The relationship between OD and cell titer depends on the configuration of the spectrophotometer, the length of the light path through the culture, the size of the bacterial cells, and the cell culture density. We demonstrate the importance of plate reader calibration to identify the exact relationship between OD and cells/ml. We use four bacterial genera and two sizes of micro-titer plates (96-well and 384-well) and show that the cell/ml per unit OD depends heavily on the bacterial cell size and plate size. We applied our calibration curve to real growth curve data and conclude the cells/ml - rather than OD - is a metric that can be used to directly compare results across experiments, labs, instruments, and species.

microbiology↗

Antibiotics shift the temperature response curve of Escherichia coli growth

Temperature variation--through time and across climatic gradients--affects individuals, populations, and communities. Yet how the thermal response of biological systems is altered by environmental stressors is poorly understood. Here we quantify two key features--optimal temperature and temperature breadth--to investigate how temperature responses vary in the presence of antibiotics. We use high-throughput screening to measure growth of Escherichia coli under single and pairwise combinations of 12 antibiotics across seven temperatures that range from 22{degrees}C to 46{degrees}C. We find that antibiotic stress often results in considerable changes in the optimal temperature for growth and a narrower temperature breadth. The direction of the optimal temperature shifts can be explained by the similarities between antibiotic-induced and temperature-induced damage to the physiology of the bacterium. We also find that the effects of pairs of stressors in the temperature response can often be explained by just one antibiotic out of the pair. Our study has implications for a general understanding of how ecological systems adapt and evolve to environmental changes.

ecology↗