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Yan, J.

Publications and source records attributed to Yan, J..

At least 127 records · Page 7Linked to original sources

Alterations in auditory midbrain processing is observed in both female andmale mouse model of Fragile X Syndrome

IntroductionSensory processing deficits presenting as auditory hypersensitivity is a common phenotype associated with Fragile X Syndrome (FXS), a leading monogenic cause of intellectual disability and autism spectrum disorder. Auditory hypersensitivity can also be observed in the FMR1-knockout (KO) mice, a well-established mouse model of autism and FXS. FXS is an X-linked disorder that is more prevalent in males compared to females, as a result most auditory and electrophysiology studies are performed in males. Previous in-vivo electrophysiology studies at the inferior colliculus (IC), an essential component of the auditory pathway, in male FMR1-KO mice at post-natal days 14, 21 and 34 (P14, P21 and P34) demonstrated increased neuronal firing, suggesting that the IC could play a role in auditory hypersensitivity. However, very little is known about the role of the central nucleus of the IC (ICc) and auditory hypersensitivity in females. MethodsHere we investigated auditory processing at P20 and P30, representative of early and late developmental stage of auditory development, respectively, at the central nucleus of the IC (ICc) of both female and male FMR1-KO mice, compared with wildtype (WT) animals. ResultsIn-vivo electrophysiology recordings from the ICc neurons of the FMR1-KO mice at both developmental ages demonstrated increased response magnitude measured by spike number to pure tones of varying frequency and amplitude, compared with age- and sex-matched WT animals. In addition, within the FMR1-KO group we also observed significant developmental and sex difference wherein higher response magnitudes were displayed at P20 and in the female mice. Minimum threshold of ICc neuron in the KO mice was significantly decreased at both P20 and P30. The ICc neurons in the KO mice also displayed increased response duration compared to WT animals at both P20 and P30, but significant sex difference was only observed at P30. Our data also indicated that the ICc neurons of both groups displayed weak negative relationship between latency and response magnitude at P20, and at P30 the WT mice showed a stronger relationship only in the female group. In terms of developmental changes, we observed decreasing neuronal firing only in the KO mice between 20- and 30-day old female and male mice. Reduced response duration was observed in 30-day old mice of both sexes of both genotypes. Regarding minimum threshold, we observed a decline between early and late auditory development only in the male mice. Finally, our results also indicated that in the WT mice the reverse relationship between latency and response magnitude became more pronounced and consistent with age, a developmental trend that was absent in both the female and male FMR1-KO mice. DiscussionOverall, our findings demonstrate that auditory processing deficits can also be observed in the female FMR1-KO mice using in-vivo electrophysiology studies, highlighting the importance of including female subjects in future studies. These results also indicate that auditory hypersensitivity can be observed robustly in younger mice, suggesting that the early development stage could be an ideal target for interventions.

neuroscience↗

Engineering Sustained-Release Broadly Neutralizing Antibody Formulations

Sustained serum levels of broadly neutralizing antibodies (bnAbs) are crucial for effective passive immunization against infectious diseases as protection persists only while these bnAbs remain at adequate concentrations within the body. Current obstacles, such as poor pharmacokinetics (PK) and burdensome administration, must be overcome to make bnAbs a viable option for pre- and post-exposure prophylaxis. In this work, we explore how a polymer-nanoparticle (PNP) hydrogel depot technology can be engineered to prolong protein delivery. In-vivo studies in mice and rats demonstrate prolonged protein release, and modeling efforts predict the impact of both the elimination half-life of the active pharmaceutical ingredient and hydrogel depot volume on overall pharmacokinetics. Moreover, flow cytometry characterization reveals that immune cell infiltration into the hydrogel depot can result in faster-than-expected release of antibody cargo on account of active transport via cellular uptake. We then demonstrate that co-formulation of antibodies with an anti-inflammatory agent reduces cellular infiltration and resulting active transport, further extending delivery and pharmacokinetics. Finally, multicompartmental modeling predicts the human PK profiles of clinically relevant HIV bnAbs delivered via subcutaneous hydrogel injection. These findings aid in the development of next generation hydrogel materials that stabilize and slowly release bnAbs for long-term pre-exposure immunoprophylaxis.

bioengineering↗

Efficient Cas9 nuclease-based editing in skeletal muscle via lipid nanoparticle delivery

Gene editing holds great promise for muscular dystrophy treatment, but the rapid evaluation of different editing modalities in skeletal muscle in vivo remains challenging due to lack of simple, effective delivery tools. Here we demonstrate that selective organ targeting (SORT) lipid nanoparticles (LNP) encapsulating optimized Cas9 cargo can facilitate efficient, local delivery to skeletal muscles achieving editing rates [≥]35% and restore protein expression for a proof-of-concept muscular dystrophy target. Interestingly, efficient editing in skeletal muscle was observed despite a strong adaptive immune response to repeat dosing of the Cas9 LNPs. High efficiency editing mediated by LNP-based delivery of Cas9 to skeletal muscle permitted detailed analysis of insertion and deletion (InDel) outcomes in vivo for a set of potential therapeutic target sites, which differed substantially from InDel outcomes observed in proliferating cells in one specific instance. Overall, our findings on enhanced LNP delivery of Cas9, platform-specific immune responses, and differential editing patterns observed between in vitro and in vivo models provide valuable insights that should inform the development of gene editing therapeutics for neuromuscular diseases. One Sentence SummarySORT LNPs permitted efficient Cas9-mediated repair of a pathogenic allele in skeletal muscle in a mouse model of LGMDR7.

molecular biology↗

Robust and Reliable de novo Protein Design: A Flow-Matching-Based Protein Generative Model Achieves Remarkably High Success Rates

Generative models have achieved significant progress in the field of protein design, particularly in the generation of tertiary structures. However, they still face several challenges, such as balancing the designability and diversity of the generated structures, generating specified structures under highly constrained conditions, and the most challenging aspect, direct functional design such as motifs and binders. We present OriginFlow, an efficient protein generative model that combines Stochastic Differential Equation (SDE) models and flow models based on flow matching. The generated structures exhibit state-of-the-art (SOTA) levels of designability, diversity, and novelty. Moreover, this model demonstrates outstanding performance in functional design aspects such as motifs, binders, and symmetric motif scaffolding. We performed binder design for multiple targets, and all results showed excellent affinity performance in AF3 complex predictions and MD experiments. Wet-lab validation was conducted on PD-L1, RBD, and VEGF targets, achieving 90% expression, solubility, and affinity. These results are significantly superior to all current AI binder design algorithms.

bioengineering↗

BioMiner: A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature

Protein-ligand bioactivity data published in the literature are essential for drug discovery, yet manual curation struggles to keep pace with rapidly growing literature. Automated bioactivity extraction remains challenging because it requires not only interpreting biochemical semantics distributed across text, tables, and figures, but also reconstructing chemically exact ligand structures (e.g., Markush structures). To address this bottleneck, we introduce BO_SCPLOWIOC_SCPLOWMO_SCPLOWINERC_SCPLOW, a multi-modal extraction framework that explicitly separates bioactivity semantic interpretation from ligand structure construction. Within BO_SCPLOWIOC_SCPLOWMO_SCPLOWINERC_SCPLOW, bioactivity semantics are inferred through direct reasoning, while chemical structures are resolved via a chemical-structure-grounded visual semantic reasoning paradigm, in which multi-modal large language models operate on chemically grounded visual representations to infer inter-structure relationships, and exact molecular construction is delegated to domain chemistry tools. For rigorous evaluation and method development, we further establish BO_SCPLOWIOC_SCPLOWVO_SCPLOWISTAC_SCPLOW, a comprehensive benchmark comprising 16,457 bioactivity entries curated from 500 publications. BO_SCPLOWIOC_SCPLOWMO_SCPLOWINERC_SCPLOW validates its extraction ability and provides a quantitative baseline, achieving an F1 score of 0.32 for bioactivity triplets. BO_SCPLOWIOC_SCPLOWMO_SCPLOWINERC_SCPLOWs practical utility is demonstrated via three applications: (1) extracting 82,262 data from 11,683 papers to build a pre-training database that improves downstream models performance by 3.9%; (2) enabling a human-in-the-loop workflow that doubles the number of high-quality NLRP3 bioactivity data, helping 38.6% improvement over 28 QSAR models and identification of 16 hit candidates with novel scaffolds; and (3) accelerating protein-ligand complex bioactivity annotation, achieving a 5.59-fold speed increase and 5.75% accuracy improvement over manual workflows in PoseBusters dataset. BO_SCPLOWIOC_SCPLOWMO_SCPLOWINERC_SCPLOW and BO_SCPLOWIOC_SCPLOWVO_SCPLOWISTAC_SCPLOW provide a scalable extraction methodology and a rigorous benchmark, paving the way to unlock bioactivity data that previously required extensive human effort. All data and code are available at GitHub.

bioinformatics↗

Altered auditory maturation in Fragile X syndrome and its involvement in audiogenic seizure susceptibility

BackgroundAuditory hypersensitivity is a prominent symptom in Fragile X syndrome (FXS), the most prevalent monogenic cause of autism and intellectual disability. FXS arises through the loss of the protein encoded by the FMR1 (Fragile X Messenger Ribonucleoprotein 1) gene, FMRP, required for normal neural circuit excitability. In the brainstem, FMRP is necessary for normal development of acoustic reactivity, and its loss has been implicated in audiogenic seizures (AGS) in Fmr1 knockout (KO) mice, modelling auditory hypersensitivity and seizures in FXS patients. PurposeThe present study investigated the correlation between auditory brainstem function and behavioral expression of AGS at the early (postnatal day P20, infancy) and late (P32, juvenile) stage of auditory development in Fmr1 KO mice compared with wildtype (WT) mice, and in both females and males. MethodsWe tested responsiveness to pure tones of select auditory pathway elements through auditory brainstem responses; and neural synchronization to amplitude envelopes of modulated acoustic stimuli through auditory steady-state responses. AGS behavior was categorized for severity during 5-minute exposure to loud sound. Expression of the immediate early gene cFos was quantified as a marker for neuronal activity in the inferior colliculus. ResultsDuring infancy, more severe AGS expression in Fmr1 KO mice compared with WT mice was accompanied by increased responsiveness to acoustic stimuli at the level of the superior olivary complex and inferior colliculus, and stronger neural synchronicity in subcortical auditory neurons. Fmr1 KO mice also had higher cFos positive cell counts in the inferior colliculus after exposure to loud sound. With age, both AGS susceptibility and exaggerated acoustic stimulus-evoked activity in the Fmr1 KO mice subsided. Intriguingly, Fmr1 KO mice displayed altered developmental profile in both the threshold and amplitude of auditory brainstem response. ConclusionOur findings support evidence that AGS activity relies upon hyperexcitability in the auditory system, including in the lower brainstem, possibly due to disturbed auditory maturation. Hyper-synchronization to modulated sounds in subcortical auditory neurons seemed to predict AGS severity. A better understanding of FXS-related circuit and behavioral symptoms of auditory processing across development provides the potential to identify therapeutic strategies to achieve auditory function recovery in FXS.

neuroscience↗

Specialized Pro-Resolving Mediator loaded Extracellular Vesicles Mitigate Pulmonary Inflammation

Specialized pro-resolving mediators (SPMs), including lipoxins derived from arachidonic acid and resolvins, protectins, and maresins derived from docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA), orchestrate the active resolution of inflammation. These SPMs are biosynthesized through the coordinated interaction of various cells in a process known as transcellular biosynthesis, involving the sequential action of cyclooxygenase-2 (COX-2), 5-lipoxygenase (5-LOX), 12-lipoxygenase (12-LOX), and/or 15-lipoxygenase (15-LOX) enzymes. Additionally, Aspirin-triggered Resolvins are produced by acetylated COX-2, along with various lipoxygenases. Although SPMs regulate various cellular processes to actively resolve inflammation, their in vivo levels are typically low. To address this limitation, we engineered a multigene expression vector that co-expresses COX-2, 5-LOX, and 15-LOX, potentiating the synthesis of various SPMs. HEK293T cells transfected with this vector and cultured with fatty acid-free BSA-complexed DHA, EPA, and aspirin, successfully mimicked both transcellular and aspirin-triggered biosynthesis of Resolvins. These Resolvins are packaged into extracellular vesicles, which significantly inhibited neutrophil adhesion to endothelial cells, preserved endothelial monolayer barrier integrity, suppressed NF-{kappa}B reporter activity, and enhanced macrophage efferocytosis in vitro. Notably, post-injury administration of Resolvin-loaded EVs mitigated pulmonary inflammation in LPS-treated mice without causing systemic or pulmonary toxicity. In summary, we report a novel cell-based platform for generating Resolvin-loaded EVs that mitigate pulmonary inflammation in mouse models, underscoring their potential for treating other acute inflammatory diseases.

synthetic biology↗

Excitation Spectral Phasor Microscopy (ExSPM) unveils spatiotemporal heterogeneities in polarity of intracellular lipid droplets

Spatiotemporal heterogeneities in intracellular LD polarity are central to cellular homeostasis but remain largely unexplored. Here, we introduce Excitation Spectral Phasor Microscopy (ExSPM), which integrates high-throughput excitation spectral imaging with phasor analysis to map LD polarity with exceptional sensitivity and spatiotemporal resolution. Using the lipophilic dye Nile Red, ExSPM revealed extensive heterogeneity and dynamics of LD polarity within single cells, reflecting lipid metabolism and energy status. Notably, high-polarity LDs emerged dynamically at lysosome- and mitochondria-contact sites, revealing pathway-specific kinetics of LD catabolism that distinguish lipophagy from neutral lipolysis. ExSPM further uncovered a tightly interconnected regulatory network among lipolytic pathways, in which perturbation of one pathway reshapes others while preserving overall energy supply. ExSPM thus provides a versatile platform to dissect intracellular compositional heterogeneity and the coordinated regulation of lipid metabolism, offering new insights into organelle function and cellular homeostasis.

cell biology↗

A reference genome assembly of the alpine forage grass Elymus nutans

Elymus nutans Griseb. (Poaceae: Triticeae, 2n=6x=42) is a dominant perennial plant species in the Qinghai-Tibetan Plateau in China, which is an important forage resource in high-altitude and cold regions and is the most popular species used for high yield artificial grassland planting because of its rich nutritional value and good palatability for herbivorous ruminant animals. In this study, using advanced sequencing technology, we generated an allohexaploid reference genome for E. nutans, representing the three sets of chromosomes (subgenomes St, Y, and H). This is the first study to our knowledge to confirm the origin of the Y subgenome, which shares a close relationship with the V subgenome. We predict that E. nutans arose via two-step hybridization and that its speciation occurred [~]3.16 MYA. The whole genome in this study will update the Triticeae family genomics information and provide theoretical basis for the evolutionary of its related speicies.

plant biology↗

Infection and host-feeding patterns of West Nile virus vectors varies by urban greenspace composition

Greenspaces are integral to the urban environment and affect climate resilience, yet the extent to which they affect mosquito and West Nile virus (WNV) host populations and behavior is not clear. To address this question, we collected mosquitoes along a transect spanning a range of urban development. Mosquitoes were tested for West Nile virus, and the host species that were fed on determined for blood-fed specimens. Bird counts and camera traps were used to assess avian and mammal species availability. Different components that contribute to WNV transmission intensity responded to different landcover variables. Abundance of Culex mosquitoes was most strongly tied to impervious surface, while prevalence of infection was associated with increasing amounts of turf grass. The amount of turf was itself correlated with a measure of avian community reservoir competence. Blood meal analysis suggested the majority of blood meals in the ornithophagic species Cx. pipiens and Cx. restuans came from American robins and northern cardinals, with the latter in particular being overutilized relative to their abundance in sites with higher WNV prevalence. This work furthers our understanding of how the design of urban greenspaces could benefit from consideration of vector-host-virus interactions.

ecology↗

The TONSL-MMS22L complex and FANCM form an interdependent complex on chromatin to counter replication stress

FANCM is branchpoint DNA translocase essential for cellular response to replication stress. Here, we show that replication stress stimulates FANCM and the TONSL-MMS22L heterodimer bound to histones H3-H4 to form an interdependent complex on chromatin. TONSL-MMS22L recruits FANCM and Fanconi anemia (FA) core complex to stalled and collapsed forks, maintains FANCM on replication-stressed chromatin, promotes FANCD2 monoubiquitination, facilitates both repair and replication traverse of DNA interstrand crosslinks (ICLs), and suppresses sister chromatid exchanges, through its interactions with FANCM and H3-H4. Reciprocally, both DNA translocase activity and phosphorylation of FANCM facilitate recruitment of TONSL-MMS22L and RAD51 to perturbed forks. Moreover, TONSL-MMS22L and FANCM function together to promote activation of the FA pathway, ICL repair, homologous recombination and replication traverse. Cancer patients with tumors with wildtype FANCM and low expression of TONSL-MMS22L have a more favorable prognosis than those with high expression. Thus, FANCM-TONSL-MMS22L acts coordinately as a complex on chromatin that resolves replication stress, and this complex may present a therapeutic target for wildtype FANCM-linked cancer.

cell biology↗

Tumor hypoxia adaptation depends on FLAD1 mediated mitochondrial metabolic reprogramming

Hypoxia, a hallmark of solid tumors, promotes the malignant progression and is challenging to target. Metabolic reprogramming and the resulting metabolic vulnerabilities provide a promising strategy to target tumor hypoxia. Here we systematically compared the metabolic network differences between hypoxic and non-hypoxic cells, and developed a deep learning model, "DepFormer", to predict the dependent metabolic genes in hypoxic tumor cells. The performance of DepFormer was validated using CRISPR screening dataset. Oxidative phosphorylation was identified as the most significantly hypoxia-dependent metabolic pathway, and FLAD1 was predicted to be one of the key hypoxia-dependent metabolic genes. FLAD1 locus is amplified, and FLAD1 expression is upregulated in various tumor types, especially in hypoxic tumors. FLAD1 depletion compromises tumors adaptation to hypoxia by disrupting mitochondrial complex II activity, leading to an imbalance between succinate and fumarate, and consequent failure to adapt to hypoxia. Subsequently, we identified a drug-like inhibitor of FLAD1, which selectively inhibits the growth of tumor cells under hypoxia. Our findings reveal FLAD1 as an innovative therapeutic target for hypoxic tumors.

cancer biology↗

A Theory of Heterosis

Heterosis refers to the superior performance of a hybrid over its parents. It is the basis for hybrid breeding particularly for maize and rice. Genetically it is due to interactions between alleles of quantitative trait loci (QTL) (dominance and epistasis). Despite enormous interest and efforts to study the genetic basis of heterosis, the relative contribution of dominance vs. epistasis to heterosis is still not clear. This is because most published studies estimate QTL effects in pieces, not able to put them together to assess the overall pattern adequately. We propose a theoretical framework that focuses on the inference of the relationship between genome and traits that includes the identification of multiple QTL and estimation of the whole set of QTL (additive, dominant, and epistatic) effects. Used for heterosis, it gives a clear genetic definition and interpretation of heterosis. We applied the theory and methods to a large maize dataset with a factorial design of many male and female inbred lines and their hybrid crosses. Heterosis of ear weight in maize is primarily due to QTL dominant effects, many are over-dominant. The contribution to heterosis due to epistasis is small and diffused. For comparison, we also analyzed a rice dataset that is an F2-type population derived from a cross between two inbred lines. The result indicates that dominance is still the main contributor to heterosis, and epistasis contribution is small. Article SummaryWe propose a general theoretical framework to analyze and interpret quantitative trait genetic variation in a population through the identification of quantitative trait loci (QTL) and the estimation of QTL effects including interactions. Applied to a large genomic study in maize, we produce direct estimation of genetic contribution to heterosis--QTL dominance and epistasis and compare them to the observed heterosis. The evidence is clear that the heterosis of ear weight in maize is primarily due to QTL dominance. The contribution to heterosis due to QTL epistasis is relatively small and diffused.

genetics↗

High-throughput, unbiased single-molecule displacement mapping with deep learning reveals spatiotemporal heterogeneities in intracellular diffusivity

Single-molecule displacement/diffusivity mapping (SMdM) has revolutionized the study of molecular motion in live cells by providing high spatial resolution insights. However, its utility is restricted by measurement biases and low throughput, making it challenging to capture temporal dynamics of intracellular diffusivity. Here we report a high-throughput single-molecule diffusivity microscopy approach (Hi-SMdM) that rapidly and unbiasedly maps nanoscale heterogeneities in molecular motion inside mammalian cells, enabling time-resolved imaging of local diffusivity dynamics. Hi-SMdM employs a self-supervised deep-learning denoising framework with a general noise model to effectively restore the scarce signals of fast-moving single molecules, while eliminating artifact motions without relying on spatial redundancies or temporal correlations. It then provides unbiased estimations of nanoscale diffusion coefficient and improve both throughput and temporal resolution by up to an order of magnitude. We demonstrate the versatility of Hi-SMdM through time-resolved mapping of the spatially heterogeneous diffusivity of free proteins in the cytoplasm. Hi-SMdM also unveils the temporal dynamics of intracellular diffusion under hypotonic conditions in live cells. Additionally, Hi-SMdM tracks the spatiotemporal dynamics of intraorganellar diffusivity during rapid rearrangements of the ER network and functional activities of mitochondria. Overall, Hi-SMdM provides exceptional opportunities for high-throughput and unbiased single-molecule diffusivity mapping with excellent spatiotemporal resolution.

biophysics↗

Identification of PKN2 and MOB4 as Coordinators of Collective Cell Migration

In animals, collective cell migration is critical during development and adult life for repairing organs. It remains, however, poorly understood compared with single cell migration. The polymerization of branched actin by the RAC1-WAVE-Arp2/3 pathway is established to power membrane protrusions at the front of migrating cells, but also to maintain cell junctions in epithelial monolayers. Here we have identified novel regulators of collective cell migration using a two-pronged approach: candidates were extracted from publicly available RAC1-WAVE-Arp2/3 dependency maps and screened in a second step using CRISPR/Cas9 genetic inactivation. In a wound healing assay, PKN2 knockout (KO) MCF10A cells display decreased collective migration due to destabilization of adherens junctions, whereas MOB4 KO cells display increased collective migration with a loss of migration orientation. Upon wound healing, PKN2 relocalizes to lateral junctions and maintains coordinated migration in the monolayer, whereas MOB4 relocalizes to the front edge of leader and follower cells collectively migrating towards the wound. The role of MOB4 in controlling collective migration requires YAP1, since MOB4 KO cells fail to activate YAP1 and their phenotype is rescued by constitutively active YAP1. Together, these findings reveal two complementary activities required for coordinating cells in collective migration.

cell biology↗

CRISPR-based shuttle cloning of 1,397 human genes into UAS vectors

The construction of genome-wide DNA libraries from publicly available resources is essential for leveraging functional genomics to investigate complex biological systems. However, all existing high-throughput cloning methods for transferring DNA fragments between vectors require PCR amplification of the DNA fragments, rendering the construction of genome-wide DNA libraries labor-intensive and time-consuming. By introducing a concept of CRISPRshuttle cassette, we herein present a method named CRISPR-based shuttle cloning (CRISPRshuttle cloning). This method enables the high-throughput transfer of numerous DNA fragments from original plasmids with identical backbones to a different vector background without the need for PCR amplification of the DNA fragments. The procedure comprises two-step test tube reactions followed by bacterial transformation. Using CRISPRshuttle we successfully generated a library of GAL4/UAS-based UAS-ORF plasmids covering 1,397 human genes conserved in Drosophila. This library may serve as a valuable resource for gain-of-function screening in cultured cells and for the creation of a transgenic UAS-ORF library in Drosophila.

molecular biology↗

Genetic targeting of astrocytes associated with specific neuronal circuit in adult Drosophila

Astrocytes are the major glial population of the brain and have been associated with a vast number of functions. To probe this diversity and to reach a similar level of understanding about astrocyte physiology that we have about neurons, we need genetic tools to target specific astrocytic subpopulations. In Drosophila, we are restricted to using driver lines that drive expression in astrocytes throughout the brain. To target specific astrocytes, we have optimized the genetic tool TRACT (and refer to it as astro-TRACT), allowing effector expression specifically in local astrocytes of a given neuronal circuit. We analyzed specificity, sensitivity and reproducibility of the tool across various MB split-Gal4 drivers. We found that the number of pre-synapses correlates positively with the success of the tool. Applying the tool to characterize morphology of individual astrocytes revealed that local astrocytes around MB medial compartments project into the ellipsoid body. Astro-TRACT will be a valuable resource to investigate both mechanistic astrocyte-neuron signaling and functional and structural astrocytic diversity across the adult Drosophila brain.

neuroscience↗

Disruption of Mitochondrial Dynamics and Stasis Leads to Liver Injury and Tumorigenesis

Background & AimsMitochondrial dysfunction has been implicated in aging and various cancer development. As highly dynamic organelles, mitochondria constantly undergo fission, mediated by dynamin-related protein 1 (DRP1, gene name Dnm1l), and fusion, regulated by mitofusin 1 (MFN1), MFN2, and optic atrophy 1 (OPA1). However, whether and how dysregulation of mitochondria dynamics would be involved in liver pathogenesis and tumorigenesis is unknown. MethodsDnm1l Flox/Flox (Dnm1lF/F), Mfn1F/F and Mfn2F/F mice were crossed with albumin-Cre mice to generate liver-specific Dnm1l knockout (L-Dnm1l KO), L-Mfn1 KO, L-Mfn2 KO, L-Mfn1, Mfn2 double KO (DKO), and L-Mfn1, Mfn2, Dnm1l triple KO (TKO) mice. These mice were housed for various periods up to 18 months. Some mice also received hydrodynamic tail vein injections of a Sleeping Beauty transposon-transposase plasmid system with c-MYC and YAP. Blood and liver tissues were harvested for biochemical and histological analysis. ResultsL-Dnm1l KO mice had elevated serum alanine aminotransferase levels and increased hepatic fibrosis as early as two months of age. By 12 to 18 months, male L-Dnm1l KO mice developed spontaneous liver tumors, primarily hepatocellular adenomas. While female L-Dnm1l KO mice also developed liver tumors, their incidence was much lower. In contrast, neither L-Mfn1 KO nor L-Mfn2 KO mice had notable liver injury or tumorigenesis. However, a small portion of DKO mice developed tumors at 15-18 month-old. Increased DNA damage, senescence and compensatory proliferation were observed in L-Dnm1l KO mice but were less evident in L-Mfn1 KO, L-Mfn2 KO or DKO mice, indicating that mitochondrial fission is more important to maintain hepatocyte homeostasis and prevent liver tumorigenesis. Interestingly, further deletion of Mfn1 and Mfn2 in L-Dnm1l KO mice markedly abolished liver injury, fibrosis, and both spontaneous and oncogene-induced tumorigenesis. RNA sequencing and metabolomics analysis revealed significant activation of the cGAS-STING-interferon pathway and alterations in the tumor microenvironment pathways, alongside increased pyrimidine synthesis and metabolism in the livers of L-Dnm1l KO mice. Notably, the changes in gene expression and pyrimidine metabolism were considerably corrected in the TKO mice. ConclusionsMitochondrial dynamics and stability are essential for maintaining hepatic mitochondrial homeostasis and hepatocyte functions. Loss of hepatic DRP1 promotes liver tumorigenesis by increasing pyrimidine metabolism and activating the cGAS-STING-mediated innate immune response.

cell biology↗