Biology subjects

Yammine, A.

Publications and source records attributed to Yammine, A..

10 recordsLinked to original sources

bioRxiv2026

Ecological interactions mediate evolutionary responses to temperature in microbial communities

Microbial populations play a pivotal role in ecosystem-level responses to rising temperatures and both their ecology and evolution can be directly influenced by warming. However, predicting microbial evolution and its ecological consequences is challenging because different genotypes within a population might respond uniquely to shifts in the abiotic and biotic environment. To understand how, we quantified evolutionary and ecological responses across temperatures in a protist of wide geographic distribution in the presence and absence of other microbial species with whom they interact (i.e., heterospecifics). In the absence of heterospecifics, we found that intraspecific interactions and warming selected in favor of a particular genotype, reducing genotypic diversity. In the presence of heterospecifics, 1) genetic diversity was further reduced under warming, resulting in temperature-dependent selection; but, 2) the magnitude of this change depended on the sign (+, 0, -) of the net ecological effect on the focal species by the heterospecifics, and this effect was itself temperature-dependent. Together, our results demonstrate that both intra- and interspecific interactions can mediate how temperature shapes microbial population rapid evolutionary responses, underscoring the importance of the ecological context in predicting evolutionary outcomes under climate change.

ecology↗

bioRxiv2024

Species interactions and food-web context drive temperature-dependent prey evolution

Global warming is reshaping food webs globally. Rapid evolution has been proposed as a buffer against climate change, but how simultaneous shifts in biotic and abiotic environments may influence evolution is unknown. Using experimental evolution and mathematical modeling in microbial food webs of prey algae and ciliate predators, we tested 1) how temperature affects prey evolution and 2) how the food-web context--i.e., predator identity, abundance, and competition among predators-- mediates prey evolutionary dynamics. We found that temperature alone does not drive prey evolution unless predators are present, and food-web context determines ensuing evolutionary dynamics. These seemingly complex evolutionary responses are predictable from the joint effects of temperature-dependent, predator-specific predation rates, and the emergence of temperature-dependent prey plasticity. We reveal that evolutionary outcomes under warming are shaped by the broader food web context of species, suggesting that the same species may exhibit different eco-evolutionary responses in different food webs under novel climates. SIGNIFICANCEPredicting how species evolve under climate change is critical for understanding future changes in food webs. Evolutionary responses have long been known to be driven by environmental change--like temperature--but whether and how ecological interactions influence this process is unknown. Using experimental evolution and mathematical modeling, we show that temperature alone does not drive prey evolution. Instead, the broader food webs context--predator identity, abundance, and competition--mediates how species evolve under warming. Additionally, we demonstrate that prey evolution depends on temperature-dependent predator-specific predation rates and prey plasticity. Our findings highlight that the same species may evolve differently within different food webs, urging the need to integrate ecological interactions when forecasting evolutionary responses to climate change.

ecology↗

bioRxiv2024

Rapid adaptive evolution of microbial thermal performance curves

Microbial respiration is a key biotic driver of climate change. Warming boosts microbial population growth, which increases biomass and respiration. This feedback might be disrupted by adaptation in thermal performance curves (TPCs) -whose shape describes how temperature drives growth. In this study, we uncover substantial genetic variation (G) in microbial intrinsic population growth rates (r), demonstrate a causal link between G variation in r and G variation in TPC shape, and show how this variation constrains r-TPC shape evolution along specific evolutionary paths across temperatures. We also uncover Gene-by-Environment (G x E) variation in r, which results in specific signatures in TPC shape and predictable temperature-dependent rapid TPC evolution but also lower G, which could reduce future evolutionary potential. Overall, we show how temperature-dependent evolution in a linchpin of global ecosystem function--microbial TPC shape--is determined by a combination of heritable and non-heritable variation in intrinsic growth rates.

ecology↗

bioRxiv2024

Predation by a ciliate community mediates temperature and nutrient effects on a peatland prey prokaryotic community.

Temperature significantly impacts microbial communities composition and function, which plays a vital role in the global carbon cycle that determines climate change. Nutrient influxes often accompany rising temperatures due to human activity. While ecological interactions between different microorganisms could shape their response to environmental change, we do not understand how predation may influence these responses in a warmer and increasingly nutrient-rich world. Here, we assess whether predation by a ciliate community of bacterial consumers influences changes in the diversity, biomass, and function of a freshwater prokaryotic community under different temperature and nutrient conditions. We found that predator presence mediates the effects of temperature and nutrients on total prokaryotic community biomass and composition through various mechanisms, including direct and indirect effects. However, the total community function was resilient. Our study supports previous findings that temperature and nutrients are essential drivers of microbial community composition and function but also demonstrates how predation can mediate these effects, indicating that the biotic context is as important as the abiotic context to understanding microbial responses to novel climates. ImportanceWhile the importance of the abiotic environment in microbial communities has long been acknowledged, how prevalent ecological interactions like predation may influence these microbial community responses to shifting abiotic conditions is largely unknown. Our study addresses the complex interplay between temperature, nutrients, predation, and their joint effects on microbial community diversity and function. Our findings suggest that while temperature and nutrients are fundamental drivers of microbial community dynamics, the presence of predators significantly alters these responses. Our study underscores the impact of abiotic factors on microbial communities and the importance of accounting for the biotic context in which these occur to understand, let alone predict, these responses properly.

ecology↗

bioRxiv2023

Climate Change Factors Interact to Shift Functional Microbial Composition in Peatlands

Microbes affect the global carbon cycle that influences climate change and are in turn influenced by environmental change. Here, we use data from a long-term whole-ecosystem warming experiment at a boreal peatland to answer how temperature and CO2 jointly influence communities of abundant, diverse, yet poorly understood, non-fungi microbial Eukaryotes (protists). These microbes influence ecosystem function directly through photosynthesis and respiration, and indirectly, through predation on decomposers (bacteria, fungi). Using a combination of high-throughput fluid imaging and 18S amplicon sequencing, we report large climate-induced, community-wide shifts in the community functional composition of these microbes (size, shape, metabolism) that could alter overall function in peatlands. Importantly, we demonstrate a taxonomic convergence but a functional divergence in response to warming and elevated CO2 with most environmental responses being contingent on organismal size: warming effects on functional composition are reversed by elevated CO2 and amplified in larger microbes but not smaller ones. These findings show how the interactive effects of warming and rising CO2 could alter the structure and function of peatland microbial food webs -- a fragile ecosystem that stores 25% of terrestrial carbon and is increasingly threatened by human exploitation.

ecology↗

bioRxiv2022

Rapid eco-phenotypic feedbacks and the temperature response of biomass dynamics

As biomass dynamics capture information on population dynamics and ecosystem-level processes (e.g., changes in production over time), understanding how rising temperatures associated with global climate change influence biomass dynamics is a pressing issue in ecology. The total biomass of a species depends on its density and its average mass. Disentangling how biomass dynamics may respond to increasingly warm and variable temperatures may thus ultimately depend on understanding how temperature influences both density and mass dynamics. Here, we address this issue by keeping track of experimental microbial populations growing to carrying capacity for 15 days at two different temperatures in the presence and absence of temperature variability. We show that temperature influences biomass through its effects on density and mass dynamics, which have opposite effects on biomass and can offset each other. We also show that temperature variability influences biomass, but that effect is independent of any effects on density or mass dynamics. Last, we show that reciprocal effects of density and mass shift significantly across temperature regimes, suggesting that rapid and environment-dependent eco-phenotypic dynamics underlie biomass responses. Overall, our results connect temperature effects on population and phenotypic dynamics to explain how biomass responds to temperature regimes, thus shedding light on processes at play in cosmopolitan and massively abundant microbes as the world experiences increasingly hot and variable temperatures.

ecology↗

bioRxiv2021

Temperature and nutrients drive complex eco-phenotypic dynamics in a microbial food web

Anthropogenic increases in temperature and nutrient loads will likely impact food web structure and stability. Although their independent effects have been reasonably well studied, their joint effects--particularly on coupled ecological and phenotypic dynamics--remain poorly understood. Here we experimentally manipulated temperature and nutrient levels in microbial food webs and used time-series analysis to quantify the strength of reciprocal effects between ecological and phenotypic dynamics across trophic levels. We found that i) joint -often interactive- effects of temperature and nutrients on ecological dynamics are more common at higher trophic levels, ii) temperature and nutrients interact to shift the relative strength of top-down vs. bottom-up control, and iii) rapid phenotypic change mediates observed ecological responses to changes in temperature and nutrients. Our results uncover how feedbacks between ecological and phenotypic dynamics mediate food web responses to environmental change. This suggests important but previously unknown ways that temperature and nutrients might jointly control the rapid eco-phenotypic feedbacks that determine food web dynamics in a changing world.

ecology↗

bioRxiv2021

Rapid plastic shifts in body size precede and determine population growth

O_LIBody size is a fundamental trait linked to many ecological processes--from individuals to ecosystems. Although the effects of body size on metabolism are well-known, the potential reciprocal effects of body size and density are less clear. Specifically, 1) whether changes in body size or density more strongly influence the other and 2) whether coupled rapid changes in body size and density are due to plasticity, rapid evolutionary change, or a combination of both. C_LIO_LIHere, we address these two issues by experimentally tracking population density and mean body size in the protist Tetrahymena pyriformis as it grows from low density to carrying capacity. We then use Convergent Cross Mapping time series analyses to infer the direction, magnitude, and causality of the link between body size and ecological dynamics. We confirm the results of our analysis by experimentally manipulating body size and density while keeping the other constant. Last, we fit mathematical models to our experimental time series that account for purely plastic change in body size, rapid evolution in size, or a combination of both, to gain insight into the processes that most likely explain the observed dynamics. C_LIO_LIOur results indicate that changes in body size more strongly influence changes in density than the other way around, but also show that there is reciprocity in this effect (i.e., a feedback). We show that a model that only accounts for purely plastic change in size most parsimoniously explains observed, coupled phenotypic and ecological dynamics. C_LIO_LITogether, these results suggest 1) that body size can shift dramatically through plasticity, well within ecological timescales, 2) that rapid changes in body size may have a larger effect on ecological dynamics than the reverse, but 3) phenotypic and ecological dynamics influence each as populations grow. Overall, we show that rapid plastic changes in functional traits like body size may play a fundamental -but currently unrecognized- role in familiar ecological processes such as logistic population growth. C_LI

ecology↗

bioRxiv2021

Increasing temperature weakens the positive effect of genetic diversity on population growth

Genetic diversity and temperature increases associated with global climate change, are known to independently influence population growth and extinction risk. Whether increasing temperature may influence the effect of genetic diversity on population growth, however, is not known. We address this issue in the model protist system Tetrahymena thermophila. We test the hypothesis that at temperatures closer to the species thermal optimum (i.e., the temperature at which population growth is maximal), genetic diversity should have a weaker effect on population growth compared to temperatures away from the thermal optimum. To do so, we grew populations of T. thermophila with varying levels of genetic diversity at increasingly warmer temperatures and quantified their intrinsic population growth rate, r. We found that genetic diversity increases population growth at cooler temperatures, but that as temperature increases, this effect almost completely disappears. We also show that a combination of changes in the amount of expressed genetic diversity (G), plastic changes in population growth across temperatures (E), and strong GxE interactions, underlie this temperature effect. Our results uncover important but largely overlooked temperature effects that have implications for the management of small populations with depauperate genetic stocks in an increasingly warming world.

ecology↗

bioRxiv2021

Predation by protists influences the temperature response of microbial communities

Temperature strongly influences microbial community structure and function, which in turn contributes to the global carbon cycle that can fuel further warming. Recent studies suggest that biotic interactions amongst microbes may play an important role in determining the temperature responses of these communities. However, how microbial predation regulates these communities under future climates is still poorly understood. Here we assess whether predation by one of the most important bacterial consumers globally - protists - influences the temperature response of a freshwater microbial community structure and function. To do so, we exposed these microbial communities to two cosmopolitan species of protists at two different temperatures, in a month-long microcosm experiment. While microbial biomass and respiration increased with temperature due to shifts in microbial community structure, these responses changed over time and in the presence of protist predators. Protists influenced microbial biomass and function through effects on community structure, and predation actually reduced microbial respiration rate at elevated temperature. Indicator species and threshold indicator taxa analyses showed that these predation effects were mostly determined by phylum-specific bacterial responses to protist density and cell size. Our study supports previous findings that temperature is an important driver of microbial communities, but also demonstrates that predation can mediate these responses to warming, with important consequences for the global carbon cycle and future warming.

ecology↗