Biology subjects

Yamawaki, N.

Publications and source records attributed to Yamawaki, N..

9 recordsLinked to original sources

bioRxiv2026

Specialized layer 5 cortical terminals target functional thalamic spines

Dendritic spines are ubiquitous morpho-functional elements of excitatory synaptic transmission and plasticity. Whether axo-spinous communication exists in the thalamus is presently unclear. Here we find that layer 5 (L5) corticothalamic terminals arising from frontal cortices selectively target thalamic spines with classical head and neck dimensions. The synapses of the L5 axo-spinous contacts were enriched in GluR1 subunit of AMPA receptor and their size correlated with their spine head volume. Synaptic stimulation of thalamic spines resulted in compartmentalized Ca2+ responses similar to that of hippocampal spines. Optogenetic activation of the frontal L5-thalamus pathway had strong impact on thalamic spiking even at high stimulation frequencies and could selectively recruit a subnetwork of thalamic cells in a behavioral state dependent manner. Optogenetic interference with the small L5-thalamic pathway perturbed motor learning. Our study reveals a hitherto unrecognized, effective top-down communication channel between the frontal cortex and thalamus that involves highly variable axo-spinous contacts.

neuroscience↗

bioRxiv2025

Intraspecific differences in habitat depth in a deep-sea isopod, Bathynomus doederleini (Crustacea: Isopoda: Cirolanidae), off the west coast of Kyushu, Japan

The giant deep-sea isopod, Bathynomus doederleini, is a benthic scavenger distributed in the northwestern Pacific. Despite its ecological importance, little is known about its habitat use and intraspecific variation in body size in relation to depth. In this study, we examined the habitat depth, size structure, and distributional limits of B. doederleini off the western coast of Kyushu, Japan, using baited traps deployed at depths ranging from 151 to 821 m. A total of 1,152 individuals were collected, with the highest catch per unit effort (CPUE) observed between 300 and 500 m. CPUE declined sharply below 700 m, likely due to thermal constraints and interspecific competition. Body size distribution varied significantly with depth: minimum body size increased with depth, while maximum body size remained constant. Smaller individuals were more abundant in shallower, warmer waters, suggesting ontogenetic habitat segregation possibly driven by metabolic and competitive factors. No brooding individuals were captured, supporting previous findings that reproductive females avoid baited traps. These results suggest that B. doederleini forms a reproductively active population in the East China Sea, with ecological adaptations to thermal conditions and depth-related niche partitioning. This study highlights the importance of trap type and environmental gradients in understanding deep-sea species ecology.

ecology↗

bioRxiv2025

Response dynamics of discrete subiculum->retrosplenial cortex projections underlying trace fear conditioning

Associating events separated in time depends on the CA1, subiculum (SUB), and retrosplenial cortex (RSP). The degree to which their connectivity and underlying circuit mechanisms contribute to the association of such temporally discontiguous events is not known. Here we showed, using trace fear conditioning (TFC), wherein mice learn to associate tone and shock separated by a temporal trace, that molecularly distinct excitatory VGluT1+ and VGluT2+ SUB[->]RSP projections subserve the associative and temporal components of TFC. During trace memory formation, VGluT2+ SUB[->]RSP projections showed increased and decreased bulk calcium activity at tone and trace onset, respectively, an activity pattern that was reestablished during memory recall. Such pattern was not observed in CA subfields, suggesting that associative and temporal components of TFC are integrated at the SUB or SUB[->]RSP synapses before being presented to the RSP. Our findings establish a circuit mechanism for representing complex temporal information in episodic memory.

neuroscience↗

bioRxiv2025

Cholinergic disruption of state-dependent retrosplenial layer 1 activity causes temporal associative memory deficit under stress

Memory functions rely on discrete patterns of neuronal activity emerging from individual neurons, their interconnected circuits, and their alignment with global brain states. We show that such patterns are generated by layer 1 inhibitory neurons in the ventral retrosplenial cortex (vRSPL1), whose activity correlated with immobility and specifically contributed to the formation of temporal associative memories. This state-dependent activity was subject to stress-induced cholinergic modulation through muscarinic 1 receptor (M1R) signaling, leading to selective impairments in temporal but not contextual associative memory. Slice studies showed that these effects were likely due to M1R-mediated inhibition of vRSPL1 neurons, transiently disrupting their local connectivity as well as responsiveness to afferent input. Together, we demonstrate a mechanism by which vRSPL1 activity aligned to immobility coordinate the formation of temporal associations. Through its sensitivity to stress-related cholinergic modulation, this mechanism presents vulnerability to traumatic amnesia, especially for temporal details of episodic memories.

neuroscience↗

bioRxiv2024

Endopiriform neurons projecting to ventral CA1 are a critical node for recognition memory

The claustrum complex is viewed as fundamental for higher order cognition; however, the circuit organization and function of its neuroanatomical subregions are not well understood. We demonstrated that some of the key roles of the CLA complex can be attributed to the connectivity and function of a small group of neurons in its ventral subregion, the endopiriform (EN). We identified a subpopulation of EN neurons by their projection to the ventral CA1 (ENvCA1-proj. neurons), embedded in recurrent circuits with other EN neurons and the piriform cortex. Although the ENvCA1-proj. neuron activity was biased toward novelty across stimulus categories, their chemogenetic inhibition selectively disrupted the memory-guided but not innate responses of mice to novelty. Based on our functional connectivity analysis, we suggest that ENvCA1-proj. neurons serve as an essential node for recognition memory through recurrent circuits mediating sustained attention to novelty, and through feed forward inhibition of distal vCA1 neurons shifting memory-guided behavior from familiarity to novelty.

neuroscience↗

bioRxiv2021

Microplastic pollution of commercial fishes from coastal and offshore waters, Japan

Microplastics (MPs) pollution is a worldwide issue in the marine environment. There is growing concern of consuming MPs through fish, yet the current contamination status of fish collected from the deep sea surrounding Japan remains limited. We present baseline data on MPs in commercially important fishes from the coastal and offshore waters near Kyushu, Japan (East China Sea). We examined the MPs in the digestive tracts of two pelagic (n = 150 in total) and five demersal species (n = 235 in total). The fish were caught by pole and line, and bottom trawl at different geographical positions. The MPs in pelagic fish (39.1 %) were higher than demersal fish (10.3 %) and of larger sizes. The MPs correlated with habitat depth and type. There was species variation in the shape and polymer composition of MPs. These results increase our understanding of the heterogeneous uptake of MPs by fishes.

ecology↗

bioRxiv2021

Circuit organization of the excitatory sensorimotor loop through hand/forelimb S1 and M1

Sensory-guided limb control relies on communication across sensorimotor loops. For active touch with the hand, the longest loop is the transcortical continuation of ascending pathways, particularly the lemnisco-cortical and corticocortical pathways carrying tactile signals via the cuneate nucleus, ventral posterior lateral (VPL) thalamus, and primary somatosensory (S1) and motor (M1) cortices to reach corticospinal neurons and influence descending activity. We characterized excitatory connectivity along this pathway in the mouse. In the lemnisco-cortical leg, disynaptic cuneate[->]VPL[->]S1 connections excited mainly layer (L) 4 neurons. In the corticocortical leg, S1[->]M1 connections from L2/3 and L5A neurons mainly excited downstream L2/3 neurons, which excite corticospinal neurons. The findings provide a detailed new wiring diagram for the hand/forelimb-related transcortical circuit, delineating a basic but complex set of cell-type-specific feedforward excitatory connections that selectively and extensively engage diverse intratelencephalic projection neurons, thereby polysynaptically linking subcortical somatosensory input to cortical motor output to spinal cord.

neuroscience↗

bioRxiv2018

Long-range inhibitory intersection of a retrosplenial thalamocortical circuit by apical tuft-targeting CA1 neurons

Dorsal hippocampus, retrosplenial cortex (RSC), and anterior thalamic nuclei (ATN) interact to mediate diverse cognitive functions, but the cellular basis for these interactions is unclear. We hypothesized a long-range circuit converging in layer 1 (L1) of RSC, based on the pathway anatomy of GABAergic CA1 retrosplenial-projecting (CA1-RP) neurons and thalamo-restrosplenial projections from ATN. We find that CA1[->]RSC projections stem from GABAergic neurons with a distinct morphology, electrophysiology, and molecular profile, likely corresponding to recently described Ntng1-expressing hippocampal interneurons. CA1-RP neurons monosynaptically inhibit L5 pyramidal neurons, principal outputs of RSC, via potent GABAergic synapses onto apical tuft dendrites in L1. These inhibitory inputs align precisely with L1-targeting thalamocortical excitatory inputs from ATN, particularly the anteroventral nucleus, forming a convergent circuit whereby CA1 inhibition can intercept ATN excitation to co-regulate RSC activity. Excitatory axons from subiculum, in contrast, innervate proximal dendrites in deeper layers. Short-term synaptic plasticity differs at each connection. Chemogenetically abrogating inhibitory CA1[->]RSC or excitatory ATN[->]RSC connections oppositely affects the encoding of contextual fear memory. Collectively, our findings identify multiple cellular mechanisms underlying hippocampo-thalamo-retrosplenial interactions, establishing CA1 RSC-projecting neurons as a distinct class with long-range axons that target apical tuft dendrites, and delineating an unusual cortical circuit in the RSC specialized for integrating long-range inhibition and thalamocortical excitation.

neuroscience↗

bioRxiv2017

Corticocortical signaling drives activity in a downstream area rapidly and scalably

Quantitative analysis of corticocortical signaling is needed to understand and model information processing in cerebral networks. However, higher-order pathways, hodologically remote from sensory input, are not amenable to spatiotemporally precise activation by sensory stimuli. Here, we combined parametric channelrhodopsin-2 (ChR2) photostimulation with multi-unit electrophysiology to study corticocortical driving in a parietofrontal pathway from retrosplenial cortex (RSC) to posterior secondary motor cortex (M2) in mice in vivo. Ketamine anesthesia was used both to eliminate complex activity associated with the awake state and to enable stable recordings of responses over a wide range of stimulus parameters. Photostimulation of ChR2-expressing neurons in RSC, the upstream area, produced local activity that decayed quickly. This activity in turn drove downstream activity in M2 that arrived rapidly (5-10 ms latencies), and scaled in amplitude across a wide range of stimulus parameters as an approximately constant fraction (~0.2) of the upstream activity. A model-based analysis could explain the corticocortically driven activity with exponentially decaying kernels (~20 ms time constant) and small delay. Reverse (antidromic) driving was similarly robust. The results show that corticocortical signaling in this pathway drives downstream activity rapidly and scalably, in a mostly linear manner. These properties, identified in anesthetized mice and represented in a simple model, suggest a robust basis for supporting complex non-linear dynamic activity in corticocortical circuits in the awake state.\n\nSIGNIFICANCE STATEMENTThe signaling properties of corticocortical connections are not well understood, particularly for higher-order inter-areal pathways. Here, we developed a paradigm based on parametric optogenetic photostimulation, linear-array electrophysiology, and mathematical modeling to characterize signaling along corticortical connections linking retrosplenial cortex to posterior secondary motor cortex (M2) in anesthetized mice. The results indicate that corticocortically driven activity in the downstream area followed the optogenetically evoked upstream activity in a rapid and scalable manner, and could be described with a simple linear integrator model. These findings suggest that this pathway, when activated selectively in the unconscious state, supports intrinsically linear inter-areal communication.

neuroscience↗