Biology subjects

Yamashita, N.

Publications and source records attributed to Yamashita, N..

7 recordsLinked to original sources

bioRxiv2025

Mycophenolate mofetil reduces the branching of microglial processes

Microglia, the resident immune cells in the central nervous system, play important roles not only in immune response but also in neurogenesis, synaptogenesis, and neural circuit formation. Microglia also surveil the brain environment via elongation and retraction of their processes. Previously, we found that the purine salvage pathway is involved in the regulation of morphology and dynamics of the microglial cell line BV2. Here, we show that intraperitoneal administration of mycophenolate mofetil (MMF), an inosine monophosphate dehydrogenase (IMPDH) inhibitor, reduces microglial branching during postnatal development. Imaging mass spectrometry analysis revealed that MMF administration decreases guanosine nucleotides in the brain. Interestingly, despite the essential role of guanosine nucleotides in cellular proliferation, MMF administration did not significantly affect microglial proliferation. On the other hand, MMF administration attenuated the level of GTP-bound forms of RhoA and Rac1 small GTPases. Notably, MMF administration decreased the number of branches, while process length remained unaffected. Since microglial branching affects microglial complexity and diversity, our findings suggest that guanosine nucleotide production is essential for generating proper microglial diversity.

neuroscience↗

bioRxiv2024

NR4A3 deficiency ameliorates contact hypersensitivity and exacerbates psoriasis by regulating gene expression in dendritic cells

NR4A3 is a transcription factor that belongs to the nuclear receptor superfamily. To reveal the roles of NR4A3 in skin diseases, we constructed contact hypersensitivity (CHS)- and imiquimod-induced psoriasis models in Nr4a3-/- mice. In the CHS induced Nr4a3-/- mice, ear swelling was significantly reduced, accompanied by suppressed migration of dendritic cells (DCs), in which CCR7 expression was reduced. In contrast, ear swelling in psoriasis model Nr4a3-/- mice was enhanced. The expression levels of inflammatory cytokines in psoriasis skin lesions and in TLR7-ligand-stimulated DCs were increased by NR4A3 deficiency. Subcutaneous (s.c.) injection of hapten-treated Nr4a3+/+ DCs induced ear swelling in Nr4a3-/- mice, and s.c. injection of TLR7-ligand-stimulated Nr4a3-/- DCs caused significant ear swelling. Compared with Nr4a3+/+ DCs, Nr4a3-/- DCs expressed lower levels of CCR7 and IRF4, and higher levels of TLR7, IRF7, IFN-{beta}, and PU.1. Taken together, NR4A3 deficiency ameliorates CHS and exacerbates psoriasis by regulating the expression of CCR7, TLR7, and related transcription factors in DCs.

immunology↗

bioRxiv2023

Dining in the daylight: Nocturnal rhinoceros beetles extend feeding periods on host trees with reduced sap exudation

While the Japanese rhinoceros beetle Trypoxylus dichotomus typically feeds on the sap of the oak Quercus acutissima and the crape myrtle Lagerstroemia subcostata during the night, it exhibits feeding activity both during the day and night when it utilizes the ash tree Fraxinus griffithii. However, the mechanisms underlying the variations in temporal activity patterns remain unknown. We compared feeding rates (measured as body mass increments) and sap exudation rates among F. griffithii, Q. acutissima, and L. subcostata. We found that beetles feeding on L. subcostata and Q. acutissima exhibited significantly higher feeding rates than those feeding on F. griffithii. No significant differences in feeding rates were observed between L. subcostata and Q. acutissima. The sap exudation rate was significantly higher for Q. acutissima than for F. griffithii. However, there were no significant differences in the sap exudation rates between F. griffithii and L. subcostata or between Q. acutissima and L. subcostata. These findings suggest that lower feeding rates on F. griffithii prolong the feeding duration, resulting in daytime activity. While the low sap exudation in L. subcostata seems inconsistent with high feeding rates on this host, this apparent contradiction could be related to the extended duration of sap exudation.

ecology↗

bioRxiv2023

Origami-based growing tube model for reproducing shell shapes

Mathematical models for shell morphology have been well-studied in theoretical morphology. The growing tube model proposed by Takashi Okamoto was developed to reproduce heteromorph ammonoids and can generate various shells by changing three parameters: curvature, torsion, and enlarging ratio. Previous studies in theoretical morphology have employed computers to visualize mathematical models. However, computers are not accessible to everyone, and merely observing the graphics of the reproduced shells does not deepen understanding of the mathematical model. Therefore, in this study, we considered using origami, which is inexpensive and readily available, to make users understand mathematical models through hands-on folding. First, we simplified the crease pattern of seashells, originally devised by an origami artist Tomoko Fuse, to create a basic crease pattern. We then identified the crease pattern elements corresponding to the three parameters in the growing tube model and the aperture-apex position determiner. Based on them, we reproduced various shell shapes, including a heteromorph-ammonoid-like shape, with origami. Finally, we investigated the constraints between parameters in the origami-growing tube model. The origami-growing tube model is expected to help disseminate mathematical models and promote theoretical biology.

scientific communication and education↗

bioRxiv2023

Immunostimulatory effects of Bacillus coagulans SANK70258

Specific intestinal bacteria modulate immunoresponses through various pathways, and several probiotic bacteria have been identified as immunostimulants by screening. In the present study, we evaluated the immunomodulating effects of Bacillus coagulans SANK70258 (B. coagulans SANK70258), a spore-forming and lactic acid-producing bacterium usable as food supplement for human and animals. We found that treatment of mouse splenocytes with {gamma}-ray irradiated B. coagulans SANK70258 induced high amount of IFN-{gamma} in comparison with 7 kinds of typical lactic acid bacteria. Further analyses using splenocytes revealed that NK cell is a major source of IFN-{gamma}, and B. coagulans SANK70258-induced IFN-{gamma} production was inhibited by neutralization of IL-12 or IL-23, depletion of CD11c+ cells, and inhibition of NF{kappa}B. B. coagulans SANK70258 also induced release of IFN-{gamma} from activated CD8+ T cells, and increased expression of chemokine receptors in CD8+ T cells. B. coagulans SANK70258-treatment induced production of cytokines from bone marrow-derived dendritic cells, which is reduced by knockdown of Tlr2 and Nod2. B. coagulans SANK70258-treatment also induced IgA production from Peyers patch cells with high level among tested lactic bacteria. The oral intake of {gamma}-ray irradiated B. coagulans SANK70258 significantly increased intestinal IgA levels and IgA-expressing B cells in the Peyers patch of mice. Taken together, we conclude that B. coagulans SANK70258 possesses high activity as immunostimulant inducing production of IFN-{gamma} and IgA.

immunology↗

bioRxiv2022

Transcytosis-mediated anterograde transport of TrkA receptors is necessary for sympathetic neuron development and function

In neurons, many membrane proteins, synthesized in cell bodies, must be efficiently delivered to axons to influence neuronal connectivity, synaptic communication, and repair. Previously, we found that axonal targeting of TrkA neurotrophin receptors in sympathetic neurons occurs via an atypical transport mechanism called transcytosis, which relies on TrkA interactions with PTP1B, a protein tyrosine phosphatase. Here, we generated TrkAR685A mice, where TrkA receptor signaling is preserved, but its PTP1B-dependent transcytosis is disrupted, to show that this mode of axonal transport is essential for sympathetic neuron development and autonomic function. TrkAR685A mice have decreased axonal TrkA levels in vivo, developmental loss of sympathetic neurons, and reduced innervation of targets. Postnatal TrkAR685A mice exhibit reduced pupil size and eyelid ptosis, indicative of sympathetic dysfunction. These findings establish the necessity of transcytosis in supplying TrkA receptors to sympathetic axons and highlight the physiological relevance of this axon targeting mechanism in the nervous system.

neuroscience↗

bioRxiv2020

APC mutant cells exploit compensatory chromosome alterations to restore tumour cell fitness

Cancer cells tolerate copy number alterations (CNAs) of genomic regions that are lethal to non-cancer cells. Certain CNAs are preferentially associated with specific cancer types and lineages, but the mechanisms underlying the emergence and selection of specific CNAs remain unclear. Adenomatous polyposis coli (APC) mutations induce mitotic errors, but their impact on tumor evolution remains elusive. We investigated APC function in cultured cells and tumors and found that its loss led to {beta}-catenin accumulation at centrosomes, suppressing its maturation through inhibition of key centrosome regulators, including Aurora kinase A (AURKA) that promotes tumor growth. These defects collectively reduced cellular fitness, leading to impaired mitotic fidelity and delayed cell cycle progression. However, in APC-mutant tumors, AURKA activity was maintained, at least in part, through the amplification of chromosomes harboring AURKA and its activator genes, yet this alone was insufficient to fully restore proliferation: aberrant chromosomal reorganization also emerged and contributed to the adaptive fitness of APC-mutant cells. Such a process of adaptive CNA selection provides a framework for understanding how specific CNAs are selected to counteract disadvantages imposed by genetic alterations during tumor progression, providing one key insight into how specific CNAs are selected in this context.

cell biology↗