Biology subjects

Yamanashi, Y.

Publications and source records attributed to Yamanashi, Y..

5 recordsLinked to original sources

bioRxiv2026

Radiocarbon dating of bird and mammal eye lenses reveals long-term chronology

Time-series isotope analysis using eye lenses has recently gained attention as a low-cost method for reconstructing long-term information from a single sampling event, with potential applications across diverse taxonomic groups. However, information from eye lenses in birds and mammals remains limited, particularly during early growth stages, and the eye-lens time axis over extended periods should be reconstructed. This study measured the radiocarbon (14C) isotope ratios of eye lenses to examine the temporal framework recorded in the eye lenses of birds and mammals. The calibrated 14C ages of the central lens sections closely matched the known birth years or years preceding their introduction to Japan. 14C ages increased progressively from the center toward the periphery of the eye lens. The Siberian tiger allowed information reconstruction spanning from 2002.4 {+/-} 1.6 to 2017.8 {+/-} 2.0, whereas the ring-tailed lemur yielded reconstructed ages from 2000.2 {+/-} 1.6 to 2019.2 {+/-} 0.0. Calendar ages for all individuals after approximately 2019 could not be resolved using the radiocarbon calibration approach applied in this study. The sulphur-crested cockatoo demonstrated the longest reconstructed time span, covering 27.4 years from 1968.7 {+/-} 1.3 to 1996.1 {+/-} 1.4. Our results indicate that eye lenses can reconstruct long-term information spanning much of the lifespan in mammals examined, whereas avian lenses can preserve information spanning several years to decades after birth. Lens growth patterns may differ according to life history; thus, future studies should examine a wider range of species and taxonomic groups with diverse life histories.

zoology↗

bioRxiv2026

Behavioral characteristics of an extremely old rhesus macaque in a zoo: Dementia-like symptoms and implications for quality of life of geriatric animals

Documenting and understanding the welfare of aging animals are crucial for maintaining their well-being and making appropriate management decisions. This study details the behaviors of an extremely old rhesus macaque (ISK) in which senile plaques and phosphorylated tau deposition were observed in post-mortem pathological analyses of the brain. We report on the activity bsudgets, behavioral rhythms, gait, quality of life (QoL) scores, and anecdotal episodes of this individual. The average 24-hour activity budgets, analyzed from surveillance camera recordings, revealed that ISK spent most of her time inactive. ISK was sometimes active at night, though her behavior remained predominantly diurnal. Gait analysis suggested that her movement patterns changed between the first (December 2020) and the last (June 2021) assessment. QoL assessments, using a scoring sheet, indicated relatively good well-being until the later stage of her life. An anecdotal episode, along with the husbandry diary, suggested signs of cognitive decline. These results suggest possible signs of physical decline, and some behavioral changes that could be associated with cognitive decline in an extremely old rhesus macaque. However, we could not confirm cognitive dysfunction without further controlled cognitive testing. We hope that future studies will consider the behavioral symptoms observed in this study as monitoring items to better understand physical and cognitive decline, and possible relationships with QoL in primates.

zoology↗

bioRxiv2021

DOK1 and DOK2 regulate CD8+ T cell signaling and memory formation without affecting tumor cell killing

Targeting intracellular inhibiting proteins is a promising strategy to improve CD8+ T cell anti-tumor efficacy. DOK1 and DOK2 are CD8+ T cell inhibitory proteins that are targeted in this study in order to improve the activation and cytotoxic capacities of these cells. To evaluate the role of DOK-1 and DOK-2 depletion in physiology and effector function of T CD8+ lymphocyte and in cancer progression, a transgenic T cell receptor mouse model specific to melanoma antigen hgp100 (pmel-1 TCR Tg) was established. Depletion of both Dok1 and Dok2 did not affect the development, proliferation, mortality, activation and cytotoxic function of naive CD8+ T cells. However, after an in vitro pre-stimulation Dok1/Dok2 DKO CD8+ T cells had higher percentage of effector memory T cells and showed an increase in levels of pAKT and pERK upon TCR stimulation. Despite this improved TCR signaling, pre-stimulated Dok1/Dok2 DKO CD8+ T cells did not show any increase in their activation or cytotoxicity capacities against melanoma cell line expressing hgp100 in vitro. Altogether we demonstrate here a novel aspect of the negative regulation by DOK1 and DOK2 proteins in CD8+ T cells. In conclusion, DOK1 and DOK2 have an inhibitory role following long term T cell stimulations.

immunology↗

bioRxiv2021

Bacillus subtilis with a 1% population enhances the activity of Enterococcus faecalis with a 99% population

Microbes are present as communities in the environment. However, the importance of minor populations has not been well studied experimentally. In this study, we evaluated the role of Bacillus subtilis with a 1% population and its effect on co-incubated Enterococcus faecalis with a 99% population. Here we used an azo dye-decolorizing Enterococcus faecalis strain T6a1 and non-dye-decolorizing Bacillus subtilis strain S4ga. The dye decolorization assay enabled the investigation of the effects of B. subtilis S4ga on the activity of E. faecalis T6a1, even when B. subtilis S4ga was present at only 1% relative abundance or lower. We found that non-decolorizing B. subtilis S4ga enhanced the dye decolorization activity of E. faecalis T6a1, shortened the lag time of E. faecalis T6a1 to start decreasing the dye concentration, and increased the time for E. faecalis T6a1 to continue dye decolorization. These effects were correlated with redox potential values. We compared the extracellular amino acids between each incubation culture of E. faecalis T6a1 and B. subtilis S4ga, which revealed their mutual relationship by cross-feeding of specific amino acids. We also compared the intracellular primary metabolites between co-incubation and sole incubation of E. faecalis T6a1. The arginine deiminase (ADI) pathway in the co-incubated E. faecalis T6a1 was activated compared to that of E. faecalis T6a1 incubated solely. These findings explained that co-incubation with B. subtilis S4ga promoted ATP production in E. faecalis T6a1 cells to a greater extent and enhanced dye-decolorization activity. IMPORTANCEThis study highlights the importance of minor bacterial populations and their effects on major populations. We used Enterococcus faecalis as the major population and Bacillus subtilis as the minor population. Both species are becoming increasingly important. Some strains of E. faecalis are antibiotic-resistant pathogens, show probiotic effects, or are applicable for textile wastewater treatment. Some strains of B. subtilis are known to produce antimicrobial agents, reduce intestinal inflammation, or restore gut microbiota. We demonstrated that a low abundance of B. subtilis with 1% population increased the amount of energy produced by E. faecalis with 99% population, which appeared as enhanced dye decolorization activity of dye-decolorizing E. faecalis. Metabolomic analysis suggested that E. faecalis and B. subtilis had a mutual relationship by feeding specific amino acids to each other. These results provide new insights into co-existing minor populations in microbial communities and will improve our understanding of bacterial control. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=155 SRC="FIGDIR/small/462685v2_ufig1.gif" ALT="Figure 1"> View larger version (35K): org.highwire.dtl.DTLVardef@950ce8org.highwire.dtl.DTLVardef@1826200org.highwire.dtl.DTLVardef@f02e5forg.highwire.dtl.DTLVardef@749e07_HPS_FORMAT_FIGEXP M_FIG C_FIG

microbiology↗

bioRxiv2020

Social relationships among captive male pygmy slow lorises (Nyctycebus pygmaeus): Is forming male same-sex pairs a feasible management strategy?

Little is known about the social behavior of pygmy slow lorises, in particular, the social relationships of same-sex individuals have rarely been investigated. The Slow Loris Conservation Center was built at the Japan Monkey Center to enhance the welfare of confiscated slow lorises, promote their conservation, improve public education and perform scientific research on the species. In the course of improving housing conditions, several same-sex pairs of pygmy slow lorises were formed. We monitored their behaviors and fecal glucocorticoid metabolite (FGM) levels to understand whether male same-sex pairings could be a feasible management strategy. The subjects were 10 male and 6 female lorises for comparison, all of whom were over five years old. We successfully formed five pairs of male lorises after eight formation attempts. Male pairs initially showed some aggressive behaviors; however, the rate decreased approximately 10 days after introduction. All of the male pairs eventually exhibited extensive affiliative social behaviors, including allogrooming and social play, during the dark (active) phase, and sleep site sharing during the light (inactive) phase. The rate of sleep site sharing during the light phase was higher than expected, suggesting that the pairs preferred to stay near each other. There was no evidence of increased stress after a long period of male-male social housing. Female same-sex pairs and male-female pairs demonstrated a high level of affiliative behaviors right after introduction. These results highlight the flexibility and high sociability of this species and indicate that such same-sex pairings are a feasible option for their social management.

zoology↗