Biology subjects

Wootton, K. L.

Publications and source records attributed to Wootton, K. L..

3 recordsLinked to original sources

bioRxiv2025

MacroMove: a global database of animal movement across taxa and movement types

Animal movement is a key ecological process that shapes species distributions and interactions and connects resources, populations and habitats, underpinning ecosystem functioning and stability. While foraging, dispersal, and migration are the most widely studied movement types, they operate at distinct spatial and temporal scales, and no single resource currently integrates these processes across taxa, traits, and ecosystems. We present MacroMove, a comprehensive global movement database containing 92,207 observations from 4,329 (4,167 using GBIF backbone) species, spanning 36 classes and 648 families across 205 countries, with data sourced from 6,234 references and 36 meta-analyses/databases. It includes both vertebrates and invertebrates from terrestrial, freshwater, and marine environments. The database includes various movement metrics - home range area, dispersal distance, migration distance, day range, routine speed and maximum speed - including summary statistics (e.g. mean, median, maximum) where available. Records are reported at individual, population, or species levels and include standardised metadata describing species identity (binomial name, class, family), research methods (e.g. sampling method, sampling level and sampling dates) and location (e.g. country, location and coordinates). The dataset was assembled from published meta-analyses/databases and original studies included in these meta-analyses. Trait information (body mass and locomotion mode) from original studies and associated metadata was incorporated, with additional data sourced from established trait databases and reputable online resources. In the final dataset, body mass is available for 98 % and locomotion for 100% of species. Taxonomy was harmonised using the Global Biodiversity Information Facility (GBIF) backbone taxonomy. The database is supplied in comma-delimited text (.csv) format to maximise accessibility and compatibility with a wide range of workflows. By consolidating existing movement data into a single, standardised and openly accessible resource, MacroMove fills a major gap in available biodiversity data. It serves as a practical and extensible foundation for synthesising movement information across taxa and ecosystems, advancing data-driven research on the ecological and evolutionary correlates of animal movement.

ecology↗

bioRxiv2024

Predicting missing links in food webs using stacked models and species traits

Networks are a powerful way to represent the complexity of complex ecological systems. However, most ecological networks are incompletely observed, e.g., food webs typically contain only partial lists of species interactions. Computational methods for inferring such missing links from observed networks can facilitate field work and investigations of the ecological processes that shape food webs. Here, we describe a stacked generalization approach to predicting missing links in food webs that can learn to optimally combine both structural and trait-based predictions, while accounting for link direction and ecological assumptions. Tests of this method on synthetic food webs show that it performs very well on networks with strong group structure, strong trait structure, and various combinations thereof. Applied to a global database of 290 food webs, the method often achieves near-perfect performance for missing link prediction, and performs better when it can exploit both species traits and patterns in connectivity. Furthermore, we find that link predictability varies with ecosystem type, correlates with certain network characteristics like size, and is principally driven by a subset of ecologically-interpretable predictors. These results indicate broad applicability of stacked generalization for studying ecological interactions and understanding the processes that drive link formation in food webs.

ecology↗

bioRxiv2021

Stable motifs delay species loss in simulated food webs

Some three-species motifs (unique patterns of interactions between three species) are both more stable when modeled in isolation and over-represented in empirical food webs. This suggests that these motifs may reduce extinction risk for species participating in them, ultimately stabilizing the food web as a whole. We test whether a species time to extinction following a perturbation is related to its participation in stable and unstable motifs and assess how motif roles co-vary with a species degree or trophic level. We found that species motif roles are related to their times to extinction following a disturbance. Specifically, participating in many omnivory motifs (whether in absolute terms, as a proportion of the species role, or relative to other species in the network) was associated with more rapid extinction, even though omnivory has previously been identified as a stable motif. Participating in the other three stable motifs (three-species chain, apparent competition, and direct competition) was associated with longer times to extinction. While motif roles were associated with extinction risk, they also varied strongly with degree and trophic level. This means that these simpler measures of a species role may be sufficient to roughly predict which species are most vulnerable to disturbance, but the additional information encapsulated in a motif role can further refine predictions of vulnerability. Moreover, where researchers are a priori interested in motif roles, our results confirm that these roles can be interpreted with respect to extinction risk.

ecology↗