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Wisecaver, J.

Publications and source records attributed to Wisecaver, J..

2 recordsLinked to original sources

Letter to the Editor regarding "Long-read genome sequencing provides novel insights into the harmful algal bloom species Prymnesium parvum" by Jian et al. (2024)

Jian et al. (2024) describe de novo genome assemblies for two strains of Prymnesium parvum (sensu lato, s.l.), a cryptic species complex of toxic, unicellular algae responsible for harmful algal blooms around the world. Here, we present evidence that the labels for UTEX 2797 and CCMP 3037 were inadvertently swapped by Jian et al. (2024). This resulted in sequence data labeled "UTEX 2797" but derived from strain CCMP 3037, and vice versa. Strain misidentification is a major risk with cryptic species like P. parvum s.l., and our reanalysis of the data in Jian et al. (2024) underscores the urgent need for clade-specific markers to ensure accurate and efficient strain identification.

genomics↗

Pumping Iron: A Multi-omics Analysis of Two Extremophilic Algae Reveals Mechanisms of Iron Economy

Marine algae are responsible for half of the worlds primary productivity, but this critical carbon sink is often constrained by insufficient iron. One species of marine algae, Dunaliella tertiolecta, is remarkable for its ability to maintain photosynthesis and thrive in low-iron environments. A related species, Dunaliella salina Bardawil, shares this attribute but is an extremophile found in hyper-saline environments. To elucidate how algae manage their iron requirements, we produced high-quality genome assemblies and transcriptomes for both species to serve as a foundation for a comparative multi-omics analysis. We identified a host of iron-uptake proteins in both species, including a massive expansion of transferrins and a novel family of siderophore-iron uptake proteins. Complementing these multiple iron-uptake routes, ferredoxin functions as a large iron reservoir that can be released by induction of flavodoxin. Proteomic analysis revealed reduced investment in the photosynthetic apparatus coupled with remodeling of antenna proteins by dramatic iron-deficiency induction of TIDI1, an LHCA-related protein found also in other chlorophytes. These combinatorial iron scavenging and sparing strategies make Dunaliella unique among photosynthetic organisms. Significance StatementDespite their small size, microalgae play a huge role in CO2 uptake via photosynthesis, and represent an important target for climate crisis mitigation efforts. Most photosynthesis proteins require iron as a co-factor so that insufficient iron often limits algal CO2 sequestration. With this in mind, we examined a genus of microalgae called Dunaliella that is exceptionally well-adapted to low iron environments. We produced complete genomes, transcriptomes, and proteomes for two species of Dunaliella that hail from radically different environments: one from coastal ocean waters and the other from salt flats. We identified dozens of genes and multiple, complementary strategies that both species utilize for iron-uptake and management that explain Dunaliellas remarkable ability to thrive on low iron.

systems biology↗