Biology subjects

Wilder, A.

Publications and source records attributed to Wilder, A..

3 recordsLinked to original sources

bioRxiv2026

Soft silicone surface stiffening by oxidation upon deep UV treatment as characterized using nanoindentation

Silicones are elastomers that have a wide variety of uses, including biomedical applications such as the coating of biomedical devices and as implants. Soft silicones with mechanical properties similar to those of biological tissues have particularly gained use as substrates for cell culture in mechanobiology studies. In this context, it would be desirable to be able to alter their surface mechanical properties with a relatively simple physical treatment. While deep ultraviolet (deep UV) or ultraviolet C (UV-C) treatment has been previously used as a surface treatment method for stiffer silicones formulations, the effect of this treatment on soft silicones relevant for mechanobiology applications is still uncharacterized. We first used nanoindentation to determine the Youngs modulus of two types of soft silicones, Qgel and GEL-8100/Syl (GEL-8100 with Sylgard-184 crosslinker), both with initial moduli in the kilopascal range. We show that nanoindentation in the presence of 1% sodium dodecyl sulfate avoids adhesion between the nanoindentation glass probe and the soft silicones. After deep UV exposure in the presence of air, nanoindentation revealed that the apparent Youngs moduli of the soft silicones Qgel and GEL-8100/Syl increased by 70% and 33%, respectively. The bulk rheology of the soft silicones were not affected, suggesting that this corresponds to a surface stiffening effect with a topical stiffening of at least several hundred kilopascals. Energy-dispersive X-ray spectroscopy results show an increase in the mole fraction of oxygen, consistent with oxidation of the surface. Attenuated Total Reflectance Fourier-Transform Infrared spectra show evidence of Si-OH group formation in GEL-8100/Syl and silicon sub-oxide formation in Qgel. Consistent with this, water contact angle measurements show enhanced hydrophilicity after deep UV treatment. Our results have implications for using soft silicones as substrates in mechanobiology studies and in processes where deep UV light is used in the surface treatment of soft silicones.

bioengineering↗

bioRxiv2025

A single-cell spatial transcriptomic census of human skin anatomy

The skin is the largest human organ and a site of significant disease burden, yet its cellular and molecular organization across the body are largely undefined. Here, we construct a spatially-resolved single-cell atlas of 1.2 million cells from normal adult human skin to localize 45 cell types across 15 anatomic sites. We define principles of organ-wide cell composition, including axes of cell diversity and specialization, and distinguish site-enriched cell types. Each body site is comprised of 10 multicellular neighborhoods that define cell-cell communication. Notably, we identify a perivascular neighborhood enriched for immune-stromal crosstalk with features resembling a homeostatic immune niche similar to skin-associated lymphoid tissue. Finally, mapping these neighborhoods onto skin disease reveals pathogenic neighborhood disruptions, including pan-disease immune alterations in the perivascular neighborhood. We present a framework charting the skins multiscale spatial organization across a molecular to macroanatomic scale. This work advances our understanding of organ-wide skin cellular organization and communication, and its architectural disruption in disease. HIGHLIGHTSO_LIHuman skin MERFISH spatial atlas of 1.2 million cells from 114 samples and 22 donors C_LIO_LICellular diversity varies along a central to peripheral body site spatial axis C_LIO_LI10 multicellular neighborhoods define skin microanatomy and homeostatic interactions C_LIO_LIHuman skin diseases feature spatial and transcriptional neighborhood remodeling C_LI

genomics↗

bioRxiv2022

Effects of generations in captivity and elevated rearing temperature on Ontario hatchery brook trout (Salvelinus fontinalis) fry quality and survival.

With increasing environmental temperatures causing concern for the status of freshwater fishes, captive breeding programs may become increasingly important for conservation efforts as well as to support fisheries. Although captive broodstocks provide reliable gamete sources for production stocking, prolonged generations under hatchery conditions selection for hatchery conditions (domestication) and reduced phenotypic plasticity to novel environmental stressors. We assessed the effects of rearing temperature and number of generations spent in captivity on the survival and quality (indicated by lack of malformations) of long-term (F20+) and newly-captive (F1) strains of Ontario hatchery brook trout (Salvelinus fontinalis) with shared genetic history. We found that elevated temperatures decreased likelihood of survival between the hatched and fry stages. Additionally, we found that elevated temperature reduced fry quality of F1 fish whereas F20+ fish were less thermally sensitive, suggesting no reduction in plasticity due to captivity. The combined effects of elevated rearing temperatures and number of hatchery generations suggest that selection for captivity can occur rapidly (in one generation) even under benign conditions, and that additive stressor effects of captivity and temperature may impact newly established strains.

ecology↗