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Wickler, S.

Publications and source records attributed to Wickler, S..

2 recordsLinked to original sources

Sedimentary ancient DNA analysis from the Iron Age courtyard and cooking pit site of Rodskjaer in Troms, Northern Norway

Courtyard sites, which are Iron Age structures unique to Norway, are often associated with cooking pit fields suggesting feasting practices, but little is known about the main purpose of these sites. To address this, a framework for sedimentary ancient DNA (sedaDNA) metabarcoding sampling was undertaken at the site of Rodskjaer, northern Norway. Of the 63 sediment samples from cooking pits, fire pits, a hearth, a fireplace, the natural shell-sand and topsoil, 52 successfully detected plant and animal sedaDNA. The plant diversity was high with 41-100 taxa. SedaDNA identified archaeologically significant taxa that were not detected by other methods, including Avena (oats), Quercus (oak), Equus (horse), and Salmo salar (salmon). Additionally, from inter-sample comparison, and with reference to worm sedaDNA we identified the archaeological contexts that were affected by partial bioturbation and root penetration that restricted interpretation of spatial or temporal differences in use of these features. This pioneering study shows the importance of taking many samples from modern and natural sediments as well as using multi-proxy analysis when conducting sedaDNA metabarcoding studies at open-air archaeological sites. If these factors are taken into consideration, sedaDNA from cooking pits can be a valuable resource for investigating uses of courtyard and cooking pit field sites.

genetics↗

The preservation of ancient DNA in archaeological fish bone

The field of ancient DNA is taxonomically dominated by studies focusing on mammals. This taxonomic bias limits our understanding of endogenous DNA preservation for vertebrate taxa with different bone physiology, such as teleost fish. In contrast to most mammalian bone, teleost bone is typically brittle, porous, lightweight and is characterized by a lack of bone remodeling during growth. Using high-throughput shotgun sequencing, we here investigate the preservation of DNA in a range of different bone elements from over 200 archaeological Atlantic cod (Gadus morhua) specimens from 38 sites in northern Europe, dating up to 8000 years before present. We observe that the majority of archaeological sites (79%) yield endogenous DNA, with 40% of sites providing samples that contain high levels (> 20%). Library preparation success and levels of endogenous DNA depend mainly on excavation site and pre-extraction laboratory treatment. The use of pre-extraction treatments lowers the rate of library success, although -- if successful -- the fraction of endogenous DNA can be improved by several orders of magnitude. This trade-off between library preparation success and levels of endogenous DNA allows for alternative extraction strategies depending on the requirements of down-stream analyses and research questions. Finally, we find that -- in contrast to mammalian bones -- different fish bone elements yield similar levels of endogenous DNA. Our results highlight the overall suitability of archaeological fish bone as a source for ancient DNA and provide novel evidence for a possible role of bone remodeling in the preservation of endogenous DNA across different classes of vertebrates.

evolutionary biology↗