Biology subjects

Wey, L. T.

Publications and source records attributed to Wey, L. T..

10 recordsLinked to original sources

bioRxiv2026

A conserved photosynthetic cytochrome enhances growth in fluctuating light

Having at least one of the small soluble electron carriers cytochrome c6 (c6) and plastocyanin is indispensable for photosynthesis. It was believed that c6 had been lost from plants until a ubiquitous and highly conserved homologue, now named cytochrome c6A (c6A), was found in Arabidopsis thaliana. In spite of an early suggestion that c6A functioned like c6 in the photosynthetic electron transport chain it was soon shown to be unable to do so despite the strong structural homology between the two proteins. The function of c6A, and why it is apparently universal in plants and green algae, therefore remained unknown. Here, we show that, in the green alga Chlamydomonas reinhardtii, c6A confers a growth advantage under fluctuating light and is crucial for maintaining the light harvesting balance between photosystems I and II in photomixotrophic conditions. We show that in the absence of c6A, the light harvesting balance shifts towards PSII, leading to a more reduced plastoquinone pool and increased photooxidative stress. This study provides insights into how photosynthetic organisms acclimatize to stressful light conditions, indicating that c6A is important for this adaptation. These findings provide a basis for further mechanistic studies on a hypothesized role for c6A in thiol-based redox regulation in the thylakoid lumen, with implications for photoprotection mechanisms such as state transitions.

plant biology↗

bioRxiv2025

A photosynthetic checkpoint halts Synechocystis sp. PCC 6803 response to nitrogen deprivation during glucose-mediated metabolic imbalance

Cyanobacteria adapt to nitrogen starvation by undergoing chlorosis, a regulated bleaching process involving the degradation of phycobilisomes, the light harvesting antennae complexes, and accumulation of glycogen. While this response is well-characterized under photoautotrophic conditions, its modulation by external organic carbon sources such as glucose remains poorly characterized. Here, we investigated how glucose affects chlorosis onset in the model cyanobacterium Synechocystis sp. PCC 6803. Using an integrative approach combining physiological assays, targeted metabolomics, RNA-sequencing, chlorophyll fluorescence and absorbance spectroscopy, we studied the underlying regulatory mechanisms, focusing on redox control and photosynthetic electron transport. Glucose supplementation prevented bleaching, even when added after nitrogen deprivation symptoms had begun. This effect was associated with excess glycogen accumulation, disrupted carbon partitioning, and buildup of metabolic intermediates, indicating a metabolic overflow. Despite these physiological differences, transcriptomic responses to nitrogen deprivation were largely similar regardless of glucose supplementation, suggesting regulation at the post-transcriptional or metabolic level. Glucose also impaired photosynthetic electron transport by creating a redox bottleneck at the photosystem II (PSII) acceptor side, leading to decreased electron transport to photosystem I (PSI) and oxidation of the P700 pool. These findings suggest that reduction of the P700 acceptor side is required to trigger chlorosis. Our results demonstrate that glucose uncouples nitrogen sensing from the bleaching process by altering redox balance and photosynthetic electron flow. We propose the existence of a redox-sensitive checkpoint that integrates metabolic state with photosynthetic performance, offering new insights into stress adaptation in cyanobacteria.

plant biology↗

bioRxiv2025

Dissecting a biological electron transport network with electrochemistry

Photosynthetic membranes contain complex networks of redox proteins and molecules which direct electrons along various energy-to-chemical interconversion reactions important for sustaining life on Earth. Analysing and disentangling the mechanisms, regulation and interdependencies of these electron transfer pathways is extremely difficult, owing to the large number of interacting components in the native membrane environment. Whilst electrochemistry is well established for studying electron transfer in purified proteins, it has proven difficult to directly wire into proteins within their native membrane environments, and even harder to probe on a systems-level the electron transfer networks they are entangled within. Here, we show how photosynthetic membranes from cyanobacteria can be directly wired to electrodes to access their complex electron transfer networks. Measurements of native membranes with structured electrodes revealed distinctive electrochemical signatures, enabling analysis from the scale of individual proteins to entire biochemical pathways, as well as their interplay. This includes measurements of overlapping photosynthetic and respiratory pathways, the redox activities of membrane-bound quinones, along with validation using in operando spectroscopic measurements. Importantly, we further demonstrated direct extraction of electrons from native membrane-bound Photosystem I at -600 mV, which is [~]1 V more negative than from purified photosystems. This finding opens up opportunities for biotechnologies for solar electricity, fuel and chemical generation. We foresee this electrochemical method being adapted to analyze other photosynthetic and non-photosynthetic membranes, as well as aiding the development of new biocatalytic, biohybrid and biomimetic systems.

biochemistry↗

bioRxiv2024

PGR5 is needed for redox-dependent regulation of ATP synthase both in chloroplasts and in cyanobacteria

The regulation of proton motive force (pmf) via ATP synthase activity is a critical mechanism by which photosynthetic organisms maintain redox homeostasis and activate photoprotective responses under fluctuating light conditions. Here, we used time-resolved electrochromic shift (ECS) measurements to investigate pmf dynamics across a range of photosynthetic organisms. Our results reveal that ATP synthase is dynamically regulated during light fluctuations, but in Arabidopsis thaliana could this regulation could not be explained by the known light-induced reduction of the CF{square}{gamma} subunit, suggesting alternative control mechanisms. The PROTON GRADIENT REGULATION 5 (PGR5) protein, previously proposed to facilitate cyclic electron transport (CET), also has a potential role in ATP synthase regulation. The physiological role of cyanobacterial Pgr5 has remained elusive. We characterised a {Delta}pgr5 mutant of Synechocystis sp. PCC 6803 and investigated pmf dynamics in pgr5 mutants of Chlamydomonas reinhardtii, Arabidopsis, and the C4 grass Setaria viridis. While PGR5 was not required for CET in Synechocystis, it was needed for downregulating ATP synthase under high irradiance in all tested organisms via a thiol redox state dependent mechanism. Furthermore, interaction between AtPGR5 and AtCF{square}{gamma} suggests that PGR5 functions as a conserved inhibitor of ATP synthase under high light, contributing to pmf retention and photoprotection. HighlightPGR5 is involved in regulation of ATP synthase in fluctuating light conditions across photosynthetic organisms in a manner that depends on the thiol redox state of the chloroplast or cell.

plant biology↗

bioRxiv2024

Strong heterologous electron sink outcompetes alternative electron transport pathways in photosynthesis

Improvement of photosynthesis requires a thorough understanding of electron partitioning under both natural and strong electron sink conditions. We applied a wide array of state-of-the-art biophysical and biochemical techniques to thoroughly investigate the fate of photosynthetic electrons in the engineered cyanobacterium Synechocystis sp. PCC 6803, a blueprint for photosynthetic biotechnology, expressing the heterologous gene for ene-reductase, YqjM. This recombinant enzyme catalyses the reduction of an exogenously added substrate into the desired product by utilising photosynthetically produced NAD(P)H, enabling whole-cell biotransformation. Through coupling the biotransformation reaction with biophysical measurements, we demonstrated that the strong artificial electron sink, outcompetes the natural electron valves, the flavodiiron protein-driven Mehler-like reaction, and cyclic electron transport. These results show that ferredoxin-NAD(P)H-oxidoreductase (FNR) is the preferred route for delivering photosynthetic electrons from reduced ferredoxin and the cellular NADPH/NADP+ ratio as a key factor in orchestrating photosynthetic electron flux. These insights are crucial for understanding molecular mechanisms of photosynthetic electron transport and harnessing photosynthesis for sustainable bioproduction by engineering the cellular source/sink balance. Furthermore, we conclude that identifying the bioenergetic bottleneck of a heterologous electron sink is a crucial prerequisite for targeted engineering of photosynthetic biotransformation platforms. Significance statementWe coupled the photosynthetic and biocatalytic (whole-cell biotransformation) performance of model cyanobacteria. We employed a heterologous NAD(P)H utilising enzyme, as a strong artificial electron sink, allowing us to gain a comprehensive understanding of photosynthetic electron partitioning. We demonstrated that the strong electron sink outcompetes natural electron sinks and cyclic electron transport.

plant biology↗

bioRxiv2024

Fourfold increase in photocurrent generation of Synechocystis sp. PCC 6803 by exopolysaccharide deprivation

Photosynthetic microorganisms, including algae and cyanobacteria, export electrons in a light-stimulated phenomenon called exoelectrogenesis. However, the route(s) by which electrons reach an external electrode from the cell remain(s) unclear. For the model cyanobacterium Synechocystis sp. PCC 6803, it has been established that electron transfer does not depend on direct extracellular electron transfer by type IV pili. However, the role of the exopolysaccharide matrix in which cells are embedded has not been investigated. We show that a Synechocystis mutant with substantially reduced exopolysaccharide production has a four-fold greater photocurrent than wild-type cells. This increase is due in part to increased adhesion of exopolysaccharide-deficient cells to electrodes. Stirred system experiments reveal that a substantial portion of the photocurrent depends on an endogenous diffusible electron mediator, supporting indirect extracellular electron transfer as the bioelectrochemical mechanism of exoelectrogenesis. These findings will be important in harnessing exoelectrogenesis for sustainable electricity generation in biophotovoltaic devices.

microbiology↗

bioRxiv2023

Optoelectronic enhancement of photocurrent by cyanobacteria on sustainable AP-VPP-fabricated PEDOT electrodes

Photosynthetic microrganisms, including cyanobacteria, can be interfaced with electrodes in biophotovoltaic devices (BPVs) for solar energy conversion. Effective BPV electrodes need to be conductive, transparent, flexible, biocompatible and environmentally friendly, while also being cost-effective, abundant in material and lightweight. The utilization of electrically conducting polymers (CPs), particularly poly(3,4-ethylenedioxythiophene) (PEDOT) fabricated by an atmospheric pressure vapor phase polymerization (AP-VPP) technique, is a promising avenue for BPV applications. However, challenges remain in optimising their performance as CPs are dynamic optoelectronic materials, and their interaction with photosynthetic biocatalysts under a range of conditions has not been explored thoroughly. Here we show that AP-VPP-PEDOT electrodes hold promise for interfacing with cyanobacteria in BPVs to generate green electricity under red and blue light and moderate applied potentials with exogenous electron mediators. The highest non-mediated photocurrent achieved was 0.48 {micro}A cm-2, with a two-layer PEDOT electrode at 0.5 V applied potential and blue light. The highest mediated photocurrent achieved was 2.73 {micro}A cm-2, with a one-layer PEDOT electrode at 0.3 V applied potential and blue light and the exogenous electron mediator 2,6-dichloro-1,4-benzoquinone (DCBQ). The proposed approach to fabricating PEDOT electrodes offers a new pathway for developing sustainable electrodes for BPVs and pinpoints strategies for future optimisation for achieving high-performance outcomes. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=77 SRC="FIGDIR/small/561827v1_ufig1.gif" ALT="Figure 1"> View larger version (30K): org.highwire.dtl.DTLVardef@1af7bfaorg.highwire.dtl.DTLVardef@1f4870forg.highwire.dtl.DTLVardef@cf0b9dorg.highwire.dtl.DTLVardef@1037f31_HPS_FORMAT_FIGEXP M_FIG C_FIG

plant biology↗

bioRxiv2021

A modular toolset for electrogenetics

Synthetic biology research and its industrial applications rely on the deterministic spatiotemporal control of gene expression. Recently, electrochemical control of gene expression has been demonstrated in electrogenetic systems (redox-responsive promoters used alongside redox inducers and an electrode), allowing for the direct integration of electronics with complex biological processes for a variety of new applications. However, the use of electrogenetic systems is limited by poor activity, tunability and standardisation. Here, we have developed a variety of genetic and electrochemical tools that facilitate the design and vastly improve the performance of electrogenetic systems. We developed a strong, unidirectional, redox-responsive promoter before deriving a mutant promoter library with a spectrum of strengths. We then constructed genetic circuits with these parts and demonstrated their activation by multiple classes of redox molecules. Finally, we demonstrated electrochemical activation of gene expression in aerobic conditions utilising a novel, modular bioelectrochemical device. This toolset provides researchers with all the elements needed to design and build optimised electrogenetic systems for specific applications.

synthetic biology↗

bioRxiv2021

A biophotoelectrochemical approach to unravelling the role of cyanobacterial cell structures in exoelectrogenesis

Photosynthetic microorganisms can export electrons outside their cells, a phenomenon called exoelectrogenesis, which can be harnessed for solar energy conversion. However, the route electrons take from thylakoid membranes to the cell exterior is not understood. Electrochemistry is a powerful analytical technique for studying electron transfer pathways. Here, we show how photoelectrochemistry can be used to compare electron flux from cyanobacterial cells of different growth stages, species and with the outer layers systematically removed. We show that the periplasmic space contributes significantly to the photocurrent profile complexity of whole cells, indicating that it gates electron transfer in exoelectrogenesis. We found that although components of the type IV pili machinery do not have a role in exoelectrogenesis, they contribute significantly to cell-electrode adherence. This study establishes that analytical photoelectrochemistry and molecular microbiology provide a powerful combination to study exoelectrogenesis, enabling future studies to answer biological questions and advance solar energy conversion applications.

biochemistry↗

bioRxiv2019

Structural basis for the allosteric regulation of the SbtA bicarbonate transporter by the PII-like protein, SbtB, from Cyanobium sp. PCC7001

Cyanobacteria have evolved a suite of enzymes and inorganic carbon (Ci) transporters that improve photosynthetic performance by increasing the localized concentration of CO2 around the primary CO2-fixating enzyme, Rubisco. This CO2-concentrating mechanism (CCM) is highly regulated, responds to illumination/darkness cycles and allows cyanobacteria to thrive under limiting Ci conditions. While the transcriptional control of CCM activity is well understood, less is known about how regulatory proteins might allosterically regulate Ci transporters in response to changing conditions. Cyanobacterial sodium-dependent bicarbonate transporters (SbtAs) are inhibited by PII-like regulatory proteins (SbtBs), with the inhibitory effect being modulated by adenylnucleotides. Here, we used isothermal titration calorimetry to show that SbtB from Cyanobium sp. PCC7001 (SbtB7001) binds AMP, ADP, cAMP and ATP with micromolar-range affinities. X-ray crystal structures of apo- and nucleotide-bound SbtB7001 revealed that while AMP, ADP and cAMP have little effect on the SbtB7001 structure, binding of ATP stabilizes the otherwise flexible T-loop and that the flexible C-terminal C-loop adopts several distinct conformations. We also show that ATP binding affinity is increased ten-fold in the presence of Ca2+ and we present an X-ray crystal structure of Ca2+ATP:SbtB7001 that shows how this metal ion facilitates additional stabilizing interactions with the apex of the T-loop. We propose that the Ca2+ATP-induced conformational change observed in SbtB7001 is important for allosteric regulation of SbtA activity by SbtB and is consistent with changing adenylnucleotide levels in illumination/darkness cycles.\n\nGRAPHICAL ABSTRACT\n\nO_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=102 SRC=\"FIGDIR/small/762807v1_ufig1.gif\" ALT=\"Figure 1\">\nView larger version (43K):\norg.highwire.dtl.DTLVardef@99bac2org.highwire.dtl.DTLVardef@b43082org.highwire.dtl.DTLVardef@1dcac4borg.highwire.dtl.DTLVardef@b38ea1_HPS_FORMAT_FIGEXP M_FIG C_FIG

biochemistry↗