Biology subjects

Weissbrodt, D. G.

Publications and source records attributed to Weissbrodt, D. G..

22 records · Page 2Linked to original sources

bioRxiv2020

Enriching and aggregating purple non-sulfur bacteria in an anaerobic sequencing-batch photobioreactor for nutrient capture from wastewater

Purple non-sulfur bacteria (PNSB), a guild of anoxygenic photomixotrophic organisms, rise interest to capture nutrients from wastewater in mixed-culture bioprocesses. One challenge targets the aggregation of PNSB biomass through gravitational separation from the treated water to facilitate its retention and accumulation, while avoiding the need for membranes. We aimed to produce an enriched, concentrated, well-settling, nutrient-removing PNSB biomass using sequencing batch regimes (SBR) in an anaerobic photobioreactor. The stirred tank was fed with a synthetic influent mimicking loaded municipal wastewater (430-860 mg CODAc LInf-1, COD:N:P ratio of 100:36:4-100:11:2 m/m/m), operated at 30{degrees}C and pH 7, and continuously irradiated with infrared (IR) light (>700 nm) at 375 W m-2. After inoculation with activated sludge at 0.1 g VSS L-1, PNSB were rapidly enriched in a first batch of 24 h: the genus Rhodobacter reached 54% of amplicon sequencing read counts. SBR operations at volume exchange ratio of 50% with decreasing hydraulic retention times (48 to 16 h; 1 to 3 cycles d-1) and increasing volumetric organic loading rates (0.2 to 1.3 kg COD m-3 d-1) stimulated the aggregation (compact granules of 50-150 m), settling (sedimentation G-flux of 4.7 kg h-1 m-2), and accumulation (as high as 3.8 g VSS L-1) of biomass. The sludge retention time (SRT) increased freely from 2.5 to 11 d without controlled sludge wasting. Acetate, ammonium, and orthophosphate were removed simultaneously (up to 96% at a rate of 1.1 kg COD m-3 d-1, 77% at 113 g N m-3 d-1, and 73% at 15 g P m-3 d-1) with a COD:N:P assimilation ratio of 100:6.7:0.9 (m/m/m). Competition for substrate and photons occurred in the PNSB guild. SBR regime shifts sequentially selected for Rhodobacter (90%) under shorter SRT and non-limiting acetate concentrations during reaction phases, Rhodopseudomonas (70%) under longer SRT and acetate limitation, and Blastochloris (10%) under higher biomass concentrations. We highlighted the benefits of a PNSB-based SBR process for biomass accumulation and simultaneous nutrient capture at substantial rates, and its underlying microbial ecology. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=121 SRC="FIGDIR/small/899062v1_ufig1.gif" ALT="Figure 1"> View larger version (37K): org.highwire.dtl.DTLVardef@1f167bdorg.highwire.dtl.DTLVardef@1d1c1e2org.highwire.dtl.DTLVardef@fe591org.highwire.dtl.DTLVardef@1a8c4e3_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIPNSB were highly enriched (90%) in an anaerobic stirred-tank photobioreactor. C_LIO_LIThe mixed-culture SBR process fostered PNSB biomass aggregation and accumulation. C_LIO_LIPNSB sludge reached 3.8 g VSS L-1 and a sedimentation G-flux of 4.7 kg h-1 m-2. C_LIO_LIPNSB enabled a high simultaneous removal of COD (96%), N (77%), and P (73%). C_LIO_LIRhodobacter, Rhodopseudomonas, and Blastochloris competed for acetate and photons. C_LI

bioengineering↗

bioRxiv2019

On anammox activity at low temperature: effect of ladderane composition, process conditions and dominant anammox population

The application of partial nitritation-anammox (PN/A) under mainstream conditions can enable substantial cost savings at wastewater treatment plants (WWTPs), but how process conditions and cell physiology affect anammox performance at psychrophilic temperatures below 15 {degrees}C remains poorly understood. We tested 14 anammox communities, including 8 from globally-installed PN/A processes, for (i) specific activity at 10-30 {degrees}C (batch assays), (ii) composition of membrane lipids (U-HPLC-HRMS/MS), and (iii) microbial community structure (16S rRNA gene amplicon sequencing). Crucially, the key parameters impacting anammox activity were the membrane lipid composition and cultivation temperature. The size of ladderane lipids and the content of bacteriohopanoids were key physiological drivers of anammox performance at low temperatures. Higher contents of (i) short C18 [3]-ladderane alkyl and (ii) large phosphatidylcholine headgroup were determined in anammox more active at 15-30 {degrees}C and 10-15 {degrees}C, respectively. At below 15 {degrees}C, the activation energies of most mesophilic cultures severely increased while those of the psychrophilic cultures remained stable; this indicates that the adaptation of mesophilic cultures to psychrophilic regime necessitates months, but in some cases can take up to 5 years. Interestingly, biomass enriched in the marine genus "Candidatus Scalindua" displayed exceptionally highest activity at 10-20 {degrees}C (0.50 kg-N.kg-VSS-1.d-1 at 10 {degrees}C, Ea10-30 {degrees}C = 51{+/-}16 kJ.mol-1), indicating outstanding potential for nitrogen removal from cold streams. Collectively, our comprehensive study provides essential knowledge of cold adaptation mechanism, will enable more accurate modelling and suggests highly promising target anammox genera for inoculation and set-up of anammox reactors, in particular for mainstream WWTPs. HighlightsO_LILadderane size and cold exposure affected anammox activation energy (Ea). C_LIO_LIEa improved with more C18 [3]-ladderanes over C20 and larger polar headgroup. C_LIO_LILong-term cold exposure reduced Ea at 10-15 {degrees}C, not activity per se. C_LIO_LIMarine "Ca. Scalindua" was exceptionally suitable for cold streams. C_LIO_LIAnammox Ea at 15-30 {degrees}C was 79{+/-}18 kJ.mol-1. C_LI Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=121 SRC="FIGDIR/small/873869v1_ufig1.gif" ALT="Figure 1"> View larger version (25K): org.highwire.dtl.DTLVardef@1c5c3aborg.highwire.dtl.DTLVardef@b11ed2org.highwire.dtl.DTLVardef@5e7ec9org.highwire.dtl.DTLVardef@1d5cba5_HPS_FORMAT_FIGEXP M_FIG C_FIG

microbiology↗

bioRxiv2019

Anticipating xenogenic pollution at the source: Impact of sterilizations on DNA release from microbial cultures

The dissemination of DNA and xenogenic elements across waterways is under scientific and public spotlight due to new gene-editing tools, such as do-it-yourself (DIY) CRISPR-Cas kits. Over decades, prevention of spread of genetically modified organisms (GMOs), antimicrobial resistances (AMR), and pathogens from transgenic systems has focused on microbial inactivation. However, sterilization methods have not been assessed for DNA release and integrity. Here, we investigated the fate of intracellular DNA from cultures of model prokaryotic (Escherichia coli) and eukaryotic (Saccharomyces cerevisiae) cells, commonly used as microbial hosts for genetic modifications, such as in white biotechnology. DNA release was tracked during exposure of these cultures to conventional sterilization methods. Autoclaving, disinfection with glutaraldehyde, and microwaving are used to inactivate broths, healthcare equipment, and GMOs produced at kitchen table. The results show that current sterilization methods are effective on microorganism inactivation but do not safeguard an aqueous residue exempt of biologically reusable xenogenic material, being regular autoclaving the most severe DNA-affecting method. Reappraisal of sterilization methods is required along with risk assessment on the emission of DNA fragments in urban systems and nature.\n\nGraphical abstract O_FIG_DISPLAY_L [Figure 1] M_FIG_DISPLAY C_FIG_DISPLAY

microbiology↗

bioRxiv2018

Biomass segregation between biofilm and flocs improves the control of nitrite-oxidizing bacteria in mainstream partial nitritation and anammox processes

The control of nitrite-oxidizing bacteria (NOB) challenges the implementation of partial nitritation and anammox (PN/A) processes under mainstream conditions. The aim of the present study was to understand how operating conditions impact microbial competition and the control of NOB in hybrid PN/A systems, where biofilm and flocs coexist. A hybrid PN/A moving-bed biofilm reactor (MBBR; also referred to as integrated fixed film activated sludge or IFAS) was operated at 15 {degrees}C on aerobically pre-treated municipal wastewater (23 mgNH4-N{middle dot}L-1). Ammonium-oxidizing bacteria (AOB) and NOB were enriched primarily in the flocs, and anammox bacteria (AMX) in the biofilm. After decreasing the dissolved oxygen concentration (DO) from 1.2 to 0.17 mgO2{middle dot}L-1 - with all other operating conditions unchanged - washout of NOB from the flocs was observed. The activity of the minor NOB fraction remaining in the biofilm was suppressed at low DO. As a result, low effluent NO3- concentrations (0.5 mgN{middle dot}L-1) were consistently achieved at aerobic nitrogen removal rates (80 mgN{middle dot}L-1{middle dot}d-1) comparable to those of conventional treatment plants. A simple dynamic mathematical model, assuming perfect biomass segregation with AOB and NOB in the flocs and AMX in the biofilm, was able to qualitatively reproduce the selective washout of NOB from the flocs in response to the decrease in DO-setpoint. Similarly, numerical simulations indicated that flocs removal is an effective operational strategy to achieve the selective washout of NOB. The direct competition for NO2- between NOB and AMX - the latter retained in the biofilm and acting as a \"NO2-sink\" - was identified by the model as key mechanism leading to a difference in the actual growth rates of AOB and NOB (i.e., NOB < AOB in flocs) and allowing for the selective NOB washout. Experimental results and model predictions demonstrate the increased operational flexibility, in terms of variables that can be easily controlled by operators, offered by hybrid systems as compared to solely biofilm systems for the control of NOB in mainstream PN/A applications.\n\nHighlightsO_LIHybrid PN/A systems provide increased operational flexibility for NOB control\nC_LIO_LIAOB and NOB enrich primarily in the flocs, and AMX in the biofilm (\"NO2-sink\")\nC_LIO_LIAMX use NO2- allowing to differentiate AOB and NOB growth rates\nC_LIO_LIA decrease in DO or an increase in floc removal leads to selective NOB washout from flocs\nC_LIO_LIThe activity of the minor NOB fraction in the biofilm is suppressed at limiting DO\nC_LI\n\n\n\nO_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=63 SRC=\"FIGDIR/small/480780v2_ufig1.gif\" ALT=\"Figure 1\">\nView larger version (21K):\norg.highwire.dtl.DTLVardef@cad5deorg.highwire.dtl.DTLVardef@9efef3org.highwire.dtl.DTLVardef@7409feorg.highwire.dtl.DTLVardef@3c1043_HPS_FORMAT_FIGEXP M_FIG C_FIG

systems biology↗