Biology subjects

Weirich, K. L.

Publications and source records attributed to Weirich, K. L..

8 recordsLinked to original sources

bioRxiv2026

Cross-linker binding strength influences actin assembly microstructure and myosin II driven remodeling

The actin cytoskeleton is a self-assembled material that acts as the mechanical scaffold of the cell. Within the cell, protein cross-linkers organize actin filaments into assemblies with various microstructures that support distinct physiological functions. These protein cross-linkers differ in structural features. To decouple the role of individual cross-linker properties in actin assembly microstructure and mechanics, we synthesize programmable cross-linkers using a DNA linker coupled to binding domains. We find that high affinity cross-linkers induce actin bundling, while low affinity cross-linkers form actin networks. Myosin II motors remodel and contract all cross-linked networks tested in distinct ways from uncross-linked networks. We find that networks with high affinity cross-linkers have different myosin induced dynamics than networks with low affinity cross-linkers. This research expands our understanding of how cells regulate their mechanics and microstructures, while also providing insight towards the structure-property relationship in complex soft materials.

biophysics↗

bioRxiv2025

Capillary-induced bundling of biopolymer networks via protein condensates

Within the cell, biopolymers form self-organized assemblies that regulate cellular processes. These assemblies can be constructed through either protein interactions or phase separation. It is known that actin filaments, which form the mechanical structure of cells, are assembled into networks and bundles by protein cross-linkers. Different network and bundle microstructures support different physiological functions. Recently, there is evidence that protein condensates interact with biopolymers to create bundles. Here, we show that protein condensates colocalize with actin filaments and form networks of bundles. The condensates absorb on actin bundles and relax into a barrel shaped droplet on bundles, evocative of drops of simple liquids on fibers. We investigate the condensate spreading and measure contact angle that condensates make with bundles. Condensates at the intersection of bundles cause capillary bridges which induce network remodeling. Our results suggest that network formation, bundling, and remodeling in biopolymer assemblies could be induced by capillary interactions due to condensates. Understanding this bundling mechanism could expand our toolkit for making self-assembled fiber-based soft materials.

biophysics↗

bioRxiv2024

Tuning the contractility and deformation modes of active actin-based assemblies in vitro: from 2D active networks to liquid crystal drops

Actin cytoskeleton-based materials are widely investigated as model cellular materials to elucidate physical mechanisms of cell mechanics, such as shape regulation and force production, as well as intriguing soft polymeric materials. In this method, we detail creating actin-based assemblies in vitro using purified protein for fluorescence microscopy studies. We polymerize long actin filaments in a sample chamber and use a polymer depletant to crowd filaments into a 2D-entangled network against a surface passivated with a surfactant layer. Adding skeletal muscle myosin II filaments in the presence of ATP induces contraction of the actin network. By bundling actin filaments with cross-linker, we tune the contractility of the assembly, transitioning from a material that buckles to a material that slides at the microscale. By reducing the length of the actin filaments through co-polymerizing actin in the presence of capping protein, we tune the material from being a 2D network to a liquid crystal. Cross-linking of dispersed short actin filaments results in 3D liquid crystal droplet formation.

biophysics↗

bioRxiv2020

Actin bundle architecture and mechanics regulate myosin II force generation

The actin cytoskeleton is a soft, structural material that underlies biological processes such as cell division, motility, and cargo transport. The cross-linked actin filaments self-organize into a myriad of architectures, from disordered meshworks to ordered bundles, which are hypothesized to control the actomyosin force generation that regulates cell migration, shape, and adhesion. Here, we use fluorescence microscopy and simulations to investigate how actin bundle architectures with varying polarity, spacing, and rigidity impact myosin II dynamics and force generation. Microscopy reveals that mixed polarity bundles formed by rigid cross-linkers support slow, bidirectional myosin II filament motion, punctuated by periods of stalled motion. Simulations reveal that these locations of stalled myosin motion correspond to sustained, high forces in regions of balanced actin filament polarity. By contrast, mixed polarity bundles formed by compliant, large cross-linkers support fast, bidirectional motion with no traps. Simulations indicate that trap duration is directly related to force magnitude, and that the observed increased velocity corresponds to lower forces resulting from both the increased bundle compliance and filament spacing. Our results indicate that the properties of actin structures regulate the dynamics and magnitude of myosin II forces, highlighting the importance of architecture and mechanics in regulating forces in biological materials.

biophysics↗

bioRxiv2019

Tuning shape and internal structure of protein droplets via biopolymer filaments

Macromolecules can phase separate to form liquid condensates, which are emerging as critical compartments in fields as diverse as intracellular organization and soft materials design. A myriad of macromolecules, including the protein FUS, form condensates which behave as isotropic liquids. Here, we investigate the influence of filament dopants on the material properties of protein liquids. We find that the short, biopolymer filaments of actin spontaneously partition into FUS droplets to form composite liquid droplets. As the concentration of the filament dopants increases, the coalescence time decreases, indicating that the dopants control the relative surface tension to viscosity. The droplet shape is tunable ranging from spherical to tactoid as the filament length or concentration is increased. We find that the tactoids are well described by a model of a bipolar liquid crystal droplet, where nematic order from the anisotropic actin filaments competes with isotropic interfacial energy from the FUS, controlling droplet shape in a size-dependent manner. Our results demonstrate a versatile approach to construct tunable, anisotropic macromolecular liquids.

biophysics↗

bioRxiv2018

Self-organizing motors divide active liquid droplets

The cytoskeleton is a collection of protein assemblies that dynamically impose spatial structure in cells and coordinate processes such as cell division and mechanical regulation. Biopolymer filaments, cross-linking proteins, and enzymatically active motor proteins collectively self-organize into various precise cytoskeletal assemblies critical for specific biological functions. An outstanding question is how the precise spatial organization arises from the component macromolecules. We develop a new system to investigate simple physical mechanisms of self-organization in biological assemblies. Using a minimal set of purified proteins, we create droplets of cross-linked biopolymer filaments. Through the addition of enzymatically active motor proteins we construct composite assemblies, evocative of cellular structures such as spindles, where the inherent anisotropy drives motor self-organization and droplet deformation. These results suggest that simple physical principles underlie the self-organization in complex biological assemblies and inform bio-inspired materials design.

biophysics↗

bioRxiv2018

Tuning molecular motor transport through cytoskeletal filament network organization

The interaction of motor proteins with intracellular filaments is required for transport processes and force generation in cells. Within a cell, crosslinking proteins organize cytoskeletal filaments both temporally and spatially to create dynamic, and structurally diverse networks. The architecture of these networks changes both the mechanics as well as the transport dynamics; however, the effects on transport are less well understood. Here, we compare the transport dynamics of myosin II motor proteins moving on model cytoskeletal networks created by common crosslinking proteins. We observe that motor dynamics change predictably based on the microstructure of the underlying networks and discuss how this can be utilized by cells to achieve specific transport goals.

biophysics↗

bioRxiv2017

Filament Rigidity And Connectivity Tune The Deformation Modes Of Active Biopolymer Networks

Molecular motors embedded within collections of actin and microtubule filaments underlie the dynamic behaviors of cytoskeletal assemblies. Understanding the physics of such motor-filament materials is critical to developing a physical model of the cytoskeleton and the design of biomimetic active materials. Here, we demonstrate through experiments and simulations that the rigidity and connectivity of filaments in active biopolymer networks regulates the anisotropy and the length scale of the underlying deformations, yielding materials with varying contractility. Semi-flexible filaments that can be compressed and bent by motor stresses undergo deformations that are predominantly biaxial. By contrast, rigid filament bundles contract via actomyosin sliding deformations that are predominantly uniaxial. Networks dominated by filament buckling are robustly contractile under a wide range of connectivities, while networks dominated by actomyosin sliding can be tuned from contractile to extensile through reduced connectivity via cross-linking. These results identify physical parameters that control the forces generated within motor-filament arrays, and provide insight into the self-organization and mechanics of cytoskeletal assemblies.

biophysics↗