Biology subjects

Weiner, A. K. M.

Publications and source records attributed to Weiner, A. K. M..

2 recordsLinked to original sources

bioRxiv2024

Protists as mediators of complex microbial and viral associations

Microbial eukaryotes (aka protists) are known for their important roles in nutrient cycling across different ecosystems. However, the composition and function of protist-associated microbiomes remains largely elusive. Here, we employ cultivation-independent single-cell isolation and genome-resolved metagenomics to provide detailed insights into underexplored microbiomes and viromes of over 100 currently uncultivable ciliates and amoebae isolated from diverse environments. Our findings reveal unique microbiome compositions and hint at an intricate network of complex interactions and associations with bacterial symbionts and viruses. We observed stark differences between ciliates and amoebae in terms of microbiome and virome compositions, highlighting the specificity of protist-microbe interactions. Over 115 of the recovered microbial genomes were affiliated with known endosymbionts of eukaryotes, including diverse members of the Holosporales, Rickettsiales, Legionellales, Chlamydiae, Dependentiae, and more than 250 were affiliated with possible host-associated bacteria of the phylum Patescibacteria. We also identified more than 80 giant viruses belonging to diverse viral lineages, of which some were actively expressing genes in single cell transcriptomes, suggesting a possible association with the sampled protists. We also revealed a wide range of other viruses that were predicted to infect eukaryotes or host-associated bacteria. Our results provide further evidence that protists serve as mediators of complex microbial and viral associations, playing a critical role in ecological networks. The frequent co-occurrence of giant viruses and diverse microbial symbionts in our samples suggests multipartite associations, particularly among amoebae. Our study provides a preliminary assessment of the microbial diversity associated with lesser-known protist lineages and paves the way for a deeper understanding of protist ecology and their roles in environmental and human health.

microbiology↗

bioRxiv2020

Reproduction of a marine planktonic protist: Individual success versus population survival

Understanding the biology of reproduction is important for retracing key evolutionary processes in organisms, yet gaining detailed insights often poses major challenges. Planktonic Foraminifera are globally distributed marine microbial eukaryotes and important contributors to the global carbon cycle. Their extant biodiversity shows restricted distribution patterns of some species, whereas others are cosmopolitan in the world ocean. Planktonic Foraminifera cannot be bred under laboratory conditions, and thus details of their life cycle remain incomplete. Solely the production of flagellated gametes has been observed and taken as an indication for an exclusively sexual reproduction. Yet, sexual reproduction by spawning of gametes in the open ocean relies on sufficient gamete encounters to maintain viable populations, which represents a problem for organisms that lack the means of active propulsion and are marked by low population densities. To increase knowledge on the reproductive biology of planktonic Foraminifera, we applied a dynamic, individual-based modelling approach with parameters based on laboratory and field observations to test if random gamete encounters under commonly observed population densities are sufficient for maintaining viable populations. We show that temporal synchronization and potentially spatial concentration of gamete release seems inevitable for maintenance of the population. We argue that planktonic Foraminifera optimized their individual reproductive success at the expense of community-wide gene flow, which may explain their high degree of diversity. Our modelling approach helps to illuminate foraminiferal population dynamics and to predict the existence of necessary reproduction strategies, which may be detected in future field experiments. This study therefore contributes to our understanding of plankton ecology and evolution and their reproductive strategies in the open ocean.

ecology↗