Biology subjects

Wakabayashi, M.

Publications and source records attributed to Wakabayashi, M..

5 recordsLinked to original sources

bioRxiv2026

Validity of Low-Dimensional Representation of Whole-Body Movements

Research on impression evaluation from whole-body movements has traditionally focused on the relationships between emotional perception or aesthetic evaluation and movement patterns characterized by local kinematic features and inter-limb coordination. However, because observers perceive the entire body simultaneously when evaluating emotions or aesthetics in real-world viewing situations, impressions derived from whole-body movements should also be investigated. This requires a low-dimensional representation that summarizes whole-body information in an interpretable manner. In the present study, we evaluated whether the state space generated by multidimensional scaling (MDS) provides a valid representation for summarizing whole-body movement. Specifically, using exercises from Radio Calisthenics No. 1, we examined whether distances between points in the MDS state space primarily reflected exercise category rather than individual differences. The results showed that distances in the state space reflected exercise category more strongly than performer identity, suggesting that MDS captures similarities among postures of the same exercise. However, the patterns of distances between conditions varied across exercise categories. These findings suggest that MDS-based state-space representations provide a valid and interpretable approach for summarizing whole-body movements. Nevertheless, further validation using a wider variety of whole-body movements and a more diverse participant population is required.

neuroscience↗

bioRxiv2026

Behavioural and neural signatures across diverse cognitive demands in a multimodal electroencephalography-functional magnetic resonance imaging design

Efficient multimodal designs that capture differences across cognitive domains and variations in cognitive demand remain limited. In this study, we tested a compact framework with 58 healthy participants who completed multimodal electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) sessions. The framework comprised two complementary batteries: the HCP-aligned multitask paradigm (HCP-mini), which integrates eight HCP-aligned cognitive tasks and rest within a single run, and an extended N-back task ranging from 0-back to 7-back. Designed to support broad cross-domain coverage and matched multimodal assessment, the two batteries captured the expected group-level behavioural structure across modalities. Behavioural performance exceeded chance levels or aligned with findings from previous studies in both EEG and fMRI. Descriptive intraclass correlation coefficient (ICC) analyses showed numerically higher within-modality run-to-run values than between-modality values. At the neural level, HCP-mini fMRI activation patterns closely recapitulated the canonical large-scale task organisation of the original HCP dataset, with corresponding task pairs showing the strongest spatial similarity. Together, these findings demonstrate a compact and efficient framework for multimodal characterisation of cognition across domains and graded cognitive demands.

neuroscience↗

bioRxiv2025

Osteochondrogenic Transdifferentiation of Vascular Smooth Muscle Cells and Microenvironmental Dynamics in Medial Arterial Calcification

BackgroundVascular calcification, particularly medial arterial calcification (MAC), considerably affects cardiovascular mortality. Current treatments are limited because of the unclear molecular mechanisms of MAC. This study aimed to establish an MAC mouse model using O-ring-induced transverse aortic constriction (OTAC) and to identify critical genes, pathways, and cellular interactions involved in MAC formation by combining lineage tracing technology and single-cell RNsA sequencing (scRNA-seq). MethodsWe developed an OTAC mouse model to mimic MAC. Adult C57BL/6J male mice underwent OTAC, and subsequent analyses were performed at various intervals. Histological and immunohistochemical evaluations were conducted to observe changes in vascular smooth muscle cells (VSMCs). Lineage tracing was used to confirm the origin of osteochondrogenic cells in the tunica media. Additionally, scRNA-seq was performed to capture the dynamic changes in VSMCs and other cell types involved in MAC development. ResultsOsteochondrogenic cells and the subsequent MAC in OTAC mice were observed using histological evaluations. Immunohistochemistry showed time-dependent decreases in -SMA expression and increases in SOX9 and RUNX2 expression in VSMCs. Lineage tracing using Myh11CreERT2;ROSA26-EGFP mice confirmed that osteochondrogenic cells originated from contractile VSMCs. scRNA-seq confirmed osteochondrogenic transdifferentiation of VSMCs and highlighted dynamic changes in surrounding cells involved in calcification-related and inflammatory processes. ConclusionThe OTAC method enabled a comprehensive understanding of the microenvironmental dynamics during MAC progression at the single-cell level. This powerful model provides a robust platform for future therapeutic intervention research. Graphic Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=140 SRC="FIGDIR/small/684711v1_ufig1.gif" ALT="Figure 1"> View larger version (58K): org.highwire.dtl.DTLVardef@c64634org.highwire.dtl.DTLVardef@12b0b9aorg.highwire.dtl.DTLVardef@106c5b4org.highwire.dtl.DTLVardef@19dd4f4_HPS_FORMAT_FIGEXP M_FIG C_FIG

cell biology↗

bioRxiv2025

Phosphorylation-Coupled Autoregulation Maintains Functional ER Exit Sites

Secretory proteins are synthesized in the endoplasmic reticulum (ER) and begin their transport from specialized domains on the ER called ER exit sites (ERES). We previously demonstrated that the interaction between TANGO1 and Sec16 is critical for ERES formation. In this study, we reveal that the phosphorylation of TANGO1 and Sec16 is regulated by a FAM83A/CK1-mediated negative feedback loop. Conversely, their dephosphorylation is regulated in a spatially distinct manner by different phosphatase complexes: PPP6R3/PPP6C for Sec16 and PPP1R15B/PPP1C for TANGO1. Excessive phosphorylation of either TANGO1 or Sec16 leads to ERES disassembly, while excessive dephosphorylation impairs secretion. Our findings demonstrate that maintaining a balanced phosphorylation state of TANGO1 and Sec16 through autoregulation by FAM83A/CK1 and the phosphatases PP1 and PP6 is essential for sustaining proper secretory activity at the ERES.

cell biology↗

bioRxiv2020

The Small GTPase OsRac1 forms two distinct immune receptor complexes containing the PRR OsCERK1 and the NLR Pit

Plants employ two different types of immune receptors, cell surface pattern recognition receptors (PRRs) and intracellular nucleotide-binding and Leucine-rich repeat-containing proteins (NLRs), to cope with pathogen invasion. Both immune receptors often share similar downstream components and responses but it remains unknown whether a PRR and an NLR assemble into the same protein complex or two distinct receptor complexes. We have previously found that the small GTPase OsRac1 plays key roles in the signaling of OsCERK1, a PRR for fungal chitin, and of Pit, an NLR for rice blast fungus, and associates directly and indirectly with both of these immune receptors. In this study, using biochemical and bioimaging approaches, we reveal that OsRac1 formed two distinct receptor complexes with OsCERK1 and with Pit. Supporting this result, OsCERK1 and Pit utilized different transport systems for anchorage to the plasma membrane. Activation of OsCERK1 and Pit led to OsRac1 activation and, concomitantly, OsRac1 shifted from a small to a large protein complex fraction. We also found that the chaperone Hsp90 contributed to the proper transport of Pit to the plasma membrane and the immune induction of Pit. These findings illuminate how the PRR OsCERK1 and the NLR Pit orchestrate rice immunity through the small GTPase OsRac1.Competing Interest StatementThe authors have declared no competing interest.View Full Text

plant biology↗