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Wahl, V.

Publications and source records attributed to Wahl, V..

10 recordsLinked to original sources

Sex-divergent responses to microglial depletion suggest distinct regulatory dependencies in the aged brain

Microglia are essential for brain homeostasis, yet their roles in the aged brain remain poorly defined. Using microRNA (miRNA) profiling, cellular-resolution spatial transcriptomics, and bulk proteomics in 21-month-old mice, we characterize sex-dimorphic responses to microglial depletion via CSF1R inhibition (PLX5622 treatment). Microglia-enriched miRNAs, notably miR-146a-5p and miR-223-3p, were downregulated across different brain regions in both sexes. Transcriptional responses were sex dimorphic: females showed predominantly cell-type-specific downregulation, while males showed bidirectional changes including upregulation of Lzts3, Shank3, and Fgfbp1 alongside downregulation of Ang. Proteomic changes were larger in magnitude and independent from mRNA changes: males exhibited 295 differentially expressed proteins (DEPs) versus 34 in females (8.7-fold difference). Male DEPs had opposing directional shifts in synaptic vesicle proteins (upregulated) and mitochondrial ATP synthesis machinery (downregulated). These data describe sex-dimorphic molecular consequences of microglial loss in the aged brain and identify candidate post-transcriptional mechanisms warranting further investigation.

neuroscience↗

Barley BODYGUARD controls cuticular specialisations regulated by SHINE transcription factors

The outer epidermis of land plants secretes a cuticular layer, a hydrophobic diffusion barrier which minimises water loss into the atmosphere and protects from pests, ultraviolet light and organ fusion. Cuticles typically comprise a polyester cutin matrix embedded and overlaid with cuticular waxes, but their exact chemical make-up, structure and functions can vary widely depending on the tissue and species. Barley shows two such cuticular specialisations: (1) deposition of a thick {beta}-diketone-rich wax bloom on multiple organs at reproductive stage, common in other Poeceae species and linked to yield; and, (2) secretion of a sticky layer on the grain fruit (caryopsis) pericarp cuticle which adheres to inner floral hulls, leading to barleys distinctive covered grain used in animal feed and malting. Two SHINE/WAX-INDUCER transcription factors in barley, HvWIN1 and NUD, promote the wax bloom and hull to caryopsis adhesion, respectively, yet little is understood about other genes involved. Leveraging near-isogenic lines of wax-deficient mutants, we identify the barley BODYGUARD1 (HvBDG1) gene encoding an /{beta}-hydrolase essential for leaf cuticular integrity and wax bloom deposition. Modelling of functional and defective alleles suggests that HvBDG1 N-terminal region control of protein flexibility is important for HvBDG1 function. In addition to their role in controlling barley epicuticular wax deposition, we show that both HvBDG1 and HvWIN1 are essential for strong hull to caryopsis adhesion. Along with NUD, these gene products differentially contribute to ultrastructural changes on the pericarp associated with a cuticular building programme driven by NUD and HvWIN1 regulation of cuticle metabolism and transport and cell wall-related genes, and correlate with shifts in pericarp surface chemistry. We also show that the previously asserted grain-specific role of NUD should be revised, as our findings reveal that it is essential for maintaining leaf cuticle integrity. Our analyses in barley suggest that NUD and HvWIN1 control cuticular specialisations and cuticle integrity in part via promotion of HvBDG1 expression, while HvWIN1 and NUD likely act independently from each other. Lastly, mining tetraploid wheat mutant populations followed by crossing to combine mutated homoeologues demonstrated that BDG1 and WIN1 orthologues also control wax bloom in wheat. Taken together, our work greatly expands the genetic networks and molecular activities important for cuticle development in cereals and the underlying mechanisms for both shared and species-specific cuticular specialisations.

plant biology↗

Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection

Aging is a multifactorial and complex physiological process, affecting every organ with characteristic manifestations. Understanding the molecular mechanisms that drive aging processes is crucial to targeting age-related disorders. Recent reports suggest that severe post-infection syndromes can partially accelerate aging. However, the underlying gene-encoded regulatory interplay, whether being shared or distinct between aging and infection biology are poorly understood. Here, we employed spatial transcriptomics to establish a multi-organ atlas (brain, heart, kidney, liver, lung, and spleen) across the mouse lifespan (4, 17, and 26 months). Dissecting high-quality fresh-frozen tissue samples at unbiased molecular resolution, we found both organ-specific and cross-organ gene dysregulation upon aging. We identified age-related trajectories in gene expression and cell state, some only detectable within their spatial context, and provide validation at subcellular resolution. The most prominent effect was organ-wide immune system activation with spatially variable severity. We therefore evaluated how aging mimics the expression signatures observed in systemic infection, using spatial transcriptomics slices from young mice infected with Plasmodium berghei ANKA. While on the gene level the effect sizes caused by the infection outweighed those of aging, we reveal a shared activation of the early complement pathway (C4b) and serine protease inhibitors (Serpin gene family) within by phenotype distinct spatial niches. We show that this common RNA signature is driven by tissue-specific cell types and eventually affects protein levels in the aged brain, rendering them a target for future mechanistic and drug discovery studies. Taken together, our study provides a coherent in-depth and cross-organ transcriptomics atlas to systematically study aging and infection in the mouse at spatiotemporal resolution. Key highlightsO_LILarge-scale and high-resolution atlas of spatial transcriptomics from six organs to study aging and systemic infection across two mouse cohorts. C_LIO_LIStrong transcriptional alterations found in distinct organ-specific niches for aging and acute malaria, with organ- and cell type-associated immune responses. C_LIO_LIDysregulation of early complement proteases (C4b) and serine protease inhibitors (Serpina3n) as common theme across central nervous system and peripheral organs. C_LI

molecular biology↗

GERMIN3 plays a role in plasmodesmatal gating to regulate meristem activation related to tuberisation, tuber dormancy release and stem branching in potato

O_LIGERMIN3 has previously been identified as a target of the tuberigen activation complex suggesting a function in potato tuberisation but its role is presently unknown. C_LIO_LITo understand the role of GERMIN3 we analysed morphological, agronomic and molecular phenotypes in transgenic lines. C_LIO_LIGERMIN3 over-expressing lines of Solanum tuberosum ssp. andigena exhibited increased tuber yields under permissive conditions and enhanced tuber numbers. Post-harvest tuber sprouting exhibited reduced apical dominance with increased numbers of sprouts. Apical dominance was reduced in aerial tissues of mature plants where stem growth from axillary buds was activated. Similar results were observed in the commercial cultivar Desiree. Over-expression of GERMIN3 had no impact on the expression of SP6A, a positive regulator of tuberisation or TFL1B, a negative regulator. The GERMIN3 protein localised to the endoplasmic reticulum and transient expression in N. benthamiana leaves resulted in plasmodesmatal gating allowing intercellular transport of GFP-tagged sporamin independent of GERMIN3 oxalate oxidase activity. C_LIO_LIGERMIN3 affects tuberisation and other developmental processes by facilitating meristem activation. This identifies GERMIN3 as a novel protein associated with control of plasmodesmatal transport and supports the importance of plasmodesmatal gating in the regulation of key potato developmental processes. C_LI

plant biology↗

Multicore-fiber microendoscopy for functional cellular in-organ imaging

Microendoscopy enables minimally invasive investigations of organs even within small cavities. Conventional microendoscopy is limited by probe size and often restricted to a single excitation wavelength. We developed and characterized a multichannel microendoscope as thin as 360 {micro}m and recorded functional cellular signals in-situ using custom written software for image processing. The endoscope had an effective resolution of 4.64 {micro}m and resolved subcellular structures of neurons. The system enabled analysis of in-situ calcium responses in murine tracheal brush cells and kidney podocytes. Additionally, ratiometric redox responses were recorded in whole, explanted organs and pancreatic islet culture. The flexibility and simplicity of our approach for imaging a variety of tissues and organs paves the way for in-vivo, longitudinal studies with cellular resolution.

bioengineering↗

Neuronal lysosome transfer to oligodendrocyte precursor cells: a novel mechanism of neuron-glia communication and its role in neurodegenerative disease

Oligodendrocyte precursor cells (OPCs) shape brain function through intricate regulatory mechanisms. Here, we observed that OPC processes establish connections with neuronal somata, with smaller lysosomes positioned near these contact sites. Tracking lysosomes demonstrated neuronal lysosomes were attracted to and released at these contact points, eventually becoming incorporated into OPC processes, suggesting a selective, OPC-evoked release of lysosomes from neuronal soma and their ingestion by OPCs, highlighting a unique lysosome-mediated communication between neurons and OPCs. Diminished branching of OPC processes resulted in fewer neuron-OPC contacts, fostering larger lysosome accumulation in neurons, altered neuronal activity and escalated prevalence of senescent neurons during aging. A similar reduction in OPC branching and neuronal lysosome accumulation was evident in an early-stage Alzheimers disease mouse model. Together, these findings underscore the pivotal role of OPC processes in modulating neuronal activity through direct somatic contact and lysosome ingestion, presenting a prospective therapeutic avenue for addressing neurodegenerative diseases.

neuroscience↗

FLOWERING LOCUS C integrates carbon and nitrogen signaling for the proper timing of flowering in Arabidopsis

The timing of flowering in plants is modulated by both carbon (C) and nitrogen (N) signaling pathways. In a previous study, we established a pivotal role of the sucrose-signaling trehalose 6-phosphate pathway in regulating flowering under N-limited short-day conditions. In this work, we expand on our finding that wild-type plants grown under N-limited short days require an active trehalose 6-phosphate pathway to be able to flower. Both wild-type plants grown under N-limited conditions and knock-down plants of TREHALOSE PHOSPHATE SYNTHASE1 induce FLOWERING LOCUS C expression, a well-known floral repressor associated with the vernalization response. When exposed to an extended period of cold, a mutant of FLOWERING LOCUS C fails to respond to N availability, and flowers at the same time under N-limited and full-nutrition conditions. Our data suggest that SUCROSE NON-FERMENTING 1 RELATED KINASE 1-dependent trehalose 6-phosphate-mediated C signaling and a novel mechanism downstream of N signaling likely involving NIN-LIKE PROTEIN 7 impact the expression of FLOWERING LOCUS C. Collectively, our data underscore the existence of a multi-factor regulatory system in which both C and N signaling pathways jointly govern the regulation of flowering in plants.

plant biology↗

The Regulatory-Associated Protein of the Target of Rapamycin Complex, RAPTOR1B, interconnects with the photoperiod pathway to promote flowering in Arabidopsis

Transition from vegetative to reproductive growth (floral transition) is a strictly regulated energy-demanding process. In Arabidopsis, light perception coupled with internal circadian rhythms allows sensing changes in the duration of the light period (photoperiod) to accelerate flowering under long days (LD) in spring. This photoperiod-mediated floral induction relies on the accumulation of CONSTANS (CO) at dusk, a transcription factor that upregulates FLOWERING LOCUS T (FT) in leaves. Subsequently, FT protein moves into the shoot apical meristem to trigger the floral transition. Light and circadian clock-related signals are known to control CO at the genetic and protein levels; however, less is known about how energy sensing regulates components of the photoperiod pathway to modulate flowering. Here, we found that RAPTOR, a component of the Target Of Rapamycin complex (TORC), contributes to the induction of specific flowering genes that are under CO control. While transcription of CO remains intact in raptor mutants, its protein levels are reduced at dusk compared to wild-type (Col-0). This is due to increased protein degradation. Remarkably, GIGANTEA (GI) protein levels, which contributes to CO stabilization at dusk, are likewise hampered in the mutant. We show that RAPTOR interacts with and co-localizes at the nucleus with GI, altering GI levels through an unknown posttranscriptional mechanism. Phenotypic and molecular analysis of genetic crosses placed RAPTOR upstream of CO and GI. Since TORC is an energy sensor, our work suggests that RAPTOR could convey energy status information into the photoperiod sensing mechanism to fine-tune flowering behavior. Significance statementFor annual plants, such as Arabidopsis, the correct timing of flowering in spring/summer is critical for reproductive success. Molecular mechanisms through which plants perceive and integrate day length with internal rhythms to accelerate flowering under long days are well described. However, little is known about the pathways sensing and conveying energy availability to the flowering programs. We found that RAPTOR, the regulatory unit of Target of Rapamycin complex (TORC), regulates CONSTANS post-transcriptionally through GIGANTEA. Both proteins are components of the photoperiod pathway of the flowering network and their miss-regulation in raptor mutants hampers the upregulation of genes promoting flowering. Our work suggests that the high energy available in long days is sensed and integrated into the photoperiod pathway by TORC.

plant biology↗

Energy status-promoted growth and development of Arabidopsis require copper deficiency response transcriptional regulator SPL7

Copper (Cu) is a cofactor of around 300 Arabidopsis proteins including photosynthetic and mitochondrial electron transfer chain enzymes critical for ATP production and carbon fixation. Plant acclimation to Cu deficiency requires the transcription factor SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE7 (SPL7). We report that in the wild type and in the spl7-1 mutant, respiratory electron flux via Cu-dependent cytochrome c oxidase remained unaffected under both normal and low-Cu cultivation conditions. Contrary to the wild type, supplementing Cu-deficient media with exogenous sugar failed to stimulate growth of spl7-1. The spl7-1 mutant accumulated carbohydrates including the signaling sugar trehalose 6-phosphate, as well as ATP and NADH, also under normal Cu supply and without sugar supplementation. Late flowering of spl7-1 was in agreement with its attenuated sugar responsiveness. Functional TOR and SnRK1 kinase signaling in spl7-1 suggested against fundamental defects in these energy-signaling hubs. Sequencing of chromatin immunoprecipitates combined with transcriptomics identified direct targets of SPL7-mediated positive regulation, including FE SUPEROXIDE DISMUTASE1 (FSD1), COPPER-DEFICIENCY-INDUCED TRANSCRIPTION FACTOR1 (CITF1) and uncharacterized bHLH23 (CITF2), as well as an enriched upstream GTACTRC motif. In summary, transducing energy availability into growth and reproductive development requires the function of SPL7. Our results could help to increase crop yields, especially on Cu-deficient soils.

plant biology↗

Sugar Signaling Induces Dynamic Changes during Meristem Development in Arabidopsis

Aerial parts of plants originate from pluripotent stem cells in the shoot apical meristem. Their population is maintained via the maintenance regulators WUSCHEL and CLAVATA3 in a negative feed-back loop. Meristem size is dynamic and undergoes a more than 2-fold expansion upon the transition to reproductive growth. The mechanism controlling this doming is largely unknown, but coinciding increased trehalose 6-phosphate and changed meristem size in overexpressing or knockdown lines of TREHALOSE PHOSPHATE SYNTHASE1 suggest a participation of sugar signaling. Here we show that TREHALOSE PHOSPHATE PHOSPHATASEJ is directly regulated by WUSCHEL. Plants with reduced levels of TREHALOSE PHOSPHATE PHOSPHATASEJ in the outer meristem layer are flowering early and its reduction in the late flowering clavata3 mutant, restores wild-type flowering. This is caused by a reduction of mature miR156 and increased expression of SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE genes. We demonstrate that these are important for age pathway-induced flowering, in a negative feed-back loop with WUSCHEL downstream of the trehalose 6-phosphate pathway. In summary, our findings demonstrate a dynamic feed-back regulation between central maintenance and flowering time regulators with sugar signaling. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=169 SRC="FIGDIR/small/439483v2_ufig1.gif" ALT="Figure 1"> View larger version (34K): org.highwire.dtl.DTLVardef@988d6eorg.highwire.dtl.DTLVardef@16d469borg.highwire.dtl.DTLVardef@1366ce5org.highwire.dtl.DTLVardef@2753f0_HPS_FORMAT_FIGEXP M_FIG O_FLOATNOSynopsis:C_FLOATNO Schematic illustration of dynamic feedback-regulations between sugar signaling, meristem maintenance and the age pathway of the flowering network in the transition SAM as compared to the vegetative SAM.During vegetative growth SAM maintenance is controlled by spatially separated WUS and CLV3 expression in a negative feedback-loop. At floral transition increased activity of the T6P pathway in the SAM uncouples this regulation. This results in an unreported special relocation of WUS expression and involves a transient negative feedback-loop between WUS and SPL4. C_FIG

plant biology↗