Biology subjects

Vranken, S.

Publications and source records attributed to Vranken, S..

4 recordsLinked to original sources

bioRxiv2026

Beyond establishment: incorporating physiological performance into predictions of invasion risk

Biological invasions are a major driver of global change, reshaping ecosystems and threatening biodiversity worldwide. Anticipating where invaders will establish and where they will exert the strongest ecological impacts are key challenges for early detection and targeted management. Although Species Distribution Models (SDMs) are widely used to forecast biological invasions, they often provide uncertain estimates of establishment ranges and limited insight into invader performance, making it difficult to anticipate ecological impacts. Here, we address these limitations by integrating physiological information on invader performance with SDMs to identify regions of high invasion risk. Using the brown alga Rugulopteryx okamurae, one of the most prominent marine invaders in Europe, we first test alternative hypotheses of northern establishment limits: (i) a cold-survival constraint driven by winter temperatures and (ii) a growth constraint derived from the species' thermal performance. To identify the more likely scenario, we combine cold-tolerance experiments with seasonal growth comparisons between the invader and a native macroalga Dictyota dichotoma, whose established distribution allows physiological performance to be directly related to realised presence. Finally, we project seasonal growth of the invader across the predicted establishment range as a proxy for biomass accumulation and potential ecological impacts. Our results indicate that northern limit in Europe will be more likely constrained by winter survival rather than growth, extending the potential establishment range of Rugulopteryx to mid-Norway. In contrast, the highest impacts are likely to remain concentrated in southern Europe, where thermal conditions sustain high year-round growth. Overall, our approach illustrates how understanding the physiological response of invaders to their environment can improve the interpretation of SDM outputs and help identify areas at greatest risk of impact within their potential establishment range.

ecology↗

bioRxiv2026

Chromosome-level genome assemblies of the red algae Porphyra dioica and Porphyra linearis

As one of the earliest-diverging multicellular eukaryotic lineages, the bladed Bangiales (Rhodophyta) possess a deep evolutionary history with a central role in the multi-billion-dollar global seaweed aquaculture industry. Although North Atlantic representatives are emerging candidates for regional mariculture, the scarcity of high-quality genomic resources for these taxa hinders both fundamental research and commercial optimization. To address this, we present the first chromosome-level genome assemblies for two native European species: Porphyra dioica (150.44 Mbp) and Porphyra linearis (95.22 Mbp). By integrating Oxford Nanopore Technologies (ONT) long-read sequencing with Hi-C proximity ligation, we generated highly contiguous nuclear genomes resolved into five chromosomes. Structural gene models were predicted through the BRAKER3 pipeline, identifying 12,548 and 10,382 protein-coding genes for P. dioica and P. linearis, respectively. Subsequent homology-based functional annotation characterized 57.4% and 59.8% of these predicted proteins. Supplemented by circularized organellar genomes, these reference genomes provide a critical framework for future research, enabling comparative studies of Atlantic-Pacific divergence and facilitating the development of selective breeding programs for sustainable European aquaculture.

genomics↗

bioRxiv2025

Rare sex but a long life sustain seaweed populations at the warm edge of their range

AimThe life cycle of many organisms is all but stable across their distribution range. Most commonly, populations respond to environmental variation by shifting the timing of reproductive events (phenology). Or more profoundly, populations may (partly) shift their mode of reproduction from sexual to asexual. Life cycle variation can impact reproductive success, gene flow, genetic diversity, and, ultimately, the evolutionary trajectory of populations. Understanding the factors that influence life cycle variation is essential for grasping the biology and ecological roles of species. This study investigates the variation in life cycles and its effects on the genetic diversity of a brown seaweed, Dictyota, across its European range. LocationNorth-East Atlantic Ocean and the Mediterranean Sea. TaxonDictyota dichotoma (Hudson) J.V. Lamouroux (Phaeophyceae, Dictyotales) MethodsWe monitored phenology, fertility and lifespan in Atlantic and Mediterranean populations at its northern and southern boundaries, and used microsatellite markers to assess how these factors influence genetic and genotypic diversity. ResultsWe observed significant differences in phenology, reproductive strategies, and genetic diversity among northern and southern European populations. In Mediterranean populations, D. dichotoma exhibited sporophytic dominance with gametophytes being extremely rare, suggesting a shift towards asexual reproduction. In contrast, North-East Atlantic populations displayed more pronounced seasonal reproductive patterns with higher frequencies of gametophytes, indicating predominant sexual reproduction. However, genetic analysis showed lower allelic richness and unique alleles in northern populations, whereas southern populations were genetically more diverse, reflecting historical biogeographic processes. Clonal reproduction was more pronounced in the Mediterranean populations, influencing the spatial genetic substructure and contributing to lower genotypic diversity compared to Atlantic populations. Main conclusionsOur findings demonstrate that life cycle variation and phenology in D. dichotoma are closely tied to regional environmental conditions and have significant implications for population structure and genetic diversity. Results highlight how shifts in reproductive strategies contribute to the evolutionary and ecological dynamics of marine macroalgae across biogeographical gradients.

ecology↗

bioRxiv2023

Non-indigenous seaweeds in the Northeast Atlantic Ocean, the Mediterranean Sea and Macaronesia: a critical synthesis of diversity, spatial and temporal patterns

Effective monitoring and combatting the effect of non-indigenous seaweeds relies on a solid confirmation of the non-indigenous status of the species. We critically analysed the status of presumed non-indigenous seaweed species reported from the Mediterranean Sea, the Northeast Atlantic Ocean and Macaronesia, resulting in a list of 140 species whose non-indigenous nature is undisputed. For an additional 87 species it is unclear if they are native or non-indigenous (cryptogenic species) or their identity requires confirmation (data deficient species). We discuss the factors underlying both taxonomic and biogeographic uncertainties and outline recommendations to reduce uncertainty about the non-indigenous status of seaweeds. Our dataset consisted of over 19,000 distribution records, half of which can be attributed to only five species (Sargassum muticum, Bonnemaisonia hamifera, Asparagopsis armata, Caulerpa cylindracea and Colpomenia peregrina), while 56 species (40%) are recorded no more than once or twice. In addition, our analyses revealed considerable variation in the diversity of non-indigenous species between the geographic regions. The Eastern Mediterranean Sea is home to the largest fraction of non-indigenous seaweed species, the majority of which have a Red Sea or Indo-Pacific origin and have entered the Mediterranean Sea mostly via the Suez Canal. Non-indigenous seaweeds with native ranges situated in the Northwest Pacific make up a large fraction of the total in the Western Mediterranean Sea, Lusitania and Northern Europe, followed by non-indigenous species with a presumed Australasian origin. Uncertainty remains, however, regarding the native range of a substantial fraction of non-indigenous seaweeds in the study area. In so far as analyses of first detections can serve as a proxy for the introduction rate of non-indigenous seaweeds, these do not reveal a decrease in the introduction rate, indicating that the current measures and policies are insufficient to battle the introduction and spread of non-indigenous species in the study area. HighlightsO_LINon-indigenous seaweed species in the Northeast Atlantic Ocean, the Mediterranean Sea and Macaronesia are critically reanalysed. C_LIO_LI>19,000 distribution records revealed considerable variation in diversity of non-indigenous seaweed species in the study area. C_LIO_LITaxonomic and biogeographic uncertainties hamper a critical evaluation of the non-indigenous status of many seaweed species. C_LI

plant biology↗