Biology subjects

Visser, A.

Publications and source records attributed to Visser, A..

3 recordsLinked to original sources

bioRxiv2026

VesSynth: Tubes Are All You Need for Robust Cross-Scale Cross-Modal 3D Vessel Segmentation

The cerebral vasculature is central to brain function, with alterations linked to numerous cerebrovascular and neurological disorders. Yet, no single imaging modality can capture the entire cerebral vascular network in humans. Instead, an array of techniques are sensitized to different spatial scales, while trading off resolution for coverage. Magnetic Resonance Imaging (MRI) typically resolves only large pial vessels, while high-resolution microscopy allows micrometer-scale vessels to be mapped over limited spatial extents. These techniques must therefore be combined to obtain a complete mapping of the cerebral angioarchitecture, which underscores the need for automatic, cross-modal vessel segmentation. Here, we introduce VesSynth, a flexible vessel segmentation framework that achieves state-of-the-art accuracy across multiple modalities and spatial resolutions (MR, optical and X-ray imaging), despite being trained entirely on synthetic data. By enabling consistent vascular mapping across scales, this framework paves the way to comprehensive investigation of cerebrovascular organization and its role in health and disease.

bioengineering↗

bioRxiv2023

Valuing carbon sequestration by Antarctic krill faecal pellets

Marine life contribute to carbon stores helping lock carbon away from the atmosphere. Open-ocean pelagic ecosystems are vastly under-reported in terms of carbon sequestration conservation potential, compared to coastal vegetation blue carbon systems. Here we show that a harvested organism, Antarctic krill, has similar carbon sequestration potential through its sinking faecal pellets as coastal blue carbon stores, namely seagrasses, mangroves and marshes. Building upon recent advances in krill abundance and faecal pellet carbon flux data, and combining these with an ocean circulation model, we show that from Austral spring to early autumn Antarctic krill sequester 20 Mt C into the deep ocean for at least 100 years. This equates to USD$ 4 - 46 billion per spring/summer season depending on the price of carbon. The footprint of remineralised krill pellet carbon has a global extent, with some reaching as far as the North Pacific. The vast area of ocean krill inhabit and their high abundance make their total carbon sequestered each year similar to that from coastal vegetated blue carbon stores. As Antarctic krill are being impacted by rapid polar climate change and they are harvested, both krill populations and their habitat warrant protection to preserve this valuable carbon sink.

ecology↗

bioRxiv2019

Large-scale in-vitro production of red blood cells from human peripheral blood mononuclear cells

Transfusion of donor-derived red blood cells is the most common form of cellular therapy. Donor availability and the potential risk of alloimmunization and other transfusion-related complications may, however, limit the availability of transfusion units especially for chronically transfused patients. In-vitro cultured, customizable red blood cells would negate these concerns and introduce precision medicine. Large-scale, cost effective production depends on optimization of culture conditions. We developed a defined medium and adapted our protocols to GMP culture requirements, which reproducibly provided pure erythroid cultures from peripheral blood mononuclear cells without prior CD34+ isolation, and a 3x107-fold increase in erythroblasts in 25 days. Expanded erythroblast cultures could be differentiated to CD71dimCD235a+CD44+CD117-DRAQ5- red blood cells in 12 days. More than 90% of the cells enucleated and expressed adult hemoglobin as well as the correct blood group antigens. Deformability and oxygen binding capacity of cultured red blood cells was comparable to in-vivo reticulocytes. Daily RNA sampling during differentiation followed by RNA-seq provided a high-resolution map/resource of changes occurring during terminal erythropoiesis. The culture process was compatible with upscaling using a G-Rex bioreactor with a capacity of 1L per reactor, allowing transition towards clinical studies and small-scale applications.

cell biology↗