Biology subjects

Velle, K. B.

Publications and source records attributed to Velle, K. B..

7 recordsLinked to original sources

bioRxiv2025

Myosin 2 drives actin contractility in fast-crawling species outside of the amorphean lineage

Myosin 2-dependent actin contractility drives essential cell functions including fast crawling motility in animal cells, Dictyostelium amoebae, and other species from the Amorphea lineage. Whether and how species outside this single eukaryotic group can generate contractile actin networks has been largely unexplored. We demonstrate that Naegleria, an amoeba from the Heterolobosea--an evolutionarily distant eukaryotic lineage that includes the fastest known crawling eukaryotes--expresses three distinct Myosin 2 homologs. Using biochemical assays and immunofluorescence, we show that these Myosin 2 proteins bind cellular actin networks and that these networks generate ATP-dependent contractility. By identifying additional Myosin 2 homologs in dozens of additional heterolobosean amoebae (but not obligate flagellates), we find a widespread correlation within this group between crawling behavior and contractile actin networks. This correlation includes the amoeba Vahlkampfia avara, which we demonstrate can crawl at speeds exceeding 180 m/min and has contractile actin networks and Myosin 2 homologs. These findings show that Myosin 2-driven contractility exists beyond Amorphea and is associated with diverse, fast-crawling cell types. Expanding the taxonomic breadth of actin network contractility impacts our basic understanding of cell motility, evolutionary biology, and of the fundamental biology of human pathogens that rely on fast cell migration.

cell biology↗

bioRxiv2025

Frog-killing chytrid fungi deploy different strategies to regulate intracellular pressure in cell types that have or lack a cell wall

Cell morphogenesis is crucial for the physiology of animals and fungi alike. While animals typically shape their cells using the actin cytoskeleton, fungi control cell shape through polarized deposition of new cell wall material, which is inflated by intracellular osmotic "turgor" pressure. Understanding where and when these mechanisms evolved is essential for understanding the evolution of cell morphogenesis. To this end, we study chytrid fungi, which have a cell type that lacks a cell wall (the "zoospore") and a cell type that has a cell wall (the "sporangium"). While chytrid sporangia rely on polarized cell wall growth to control shape, we previously showed that the "frog-killing" chytrid fungus Batrachochytrium dendrobatidis (Bd) uses actin to control zoospore shape. Whether either zoospores or sporangia also use intracellular pressure regulation in cell shape control remains an open question. Here, we use live-cell imaging, environmental perturbations, and small molecule inhibitors to show that Bd sporangia generate and maintain turgor pressure, while Bd zoospores use specialized organelles called contractile vacuoles to pump water out of the cell, thereby keeping internal pressure low. Because chytrid fungi diverged prior to the evolution of the Dikarya--the fungal group comprising yeast, mushrooms, and filamentous fungi--these findings suggest that turgor pressure evolved early, and that cell morphogenesis underwent a major transition during early fungal evolution. We also suggest that the last common fungal ancestor may have, like chytrid fungi, employed stage-specific strategies for cell shape control--illustrating how developmental flexibility in cellular mechanisms can serve as a wellspring of evolutionary innovation.

cell biology↗

bioRxiv2025

Changes in nuclear and actin mechanics from G1 to G2 affect nuclear integrity

The structural integrity of the nucleus is dependent on nuclear mechanical elements of chromatin and lamins to resist antagonistic actin cytoskeleton forces. Imbalance results in nuclear blebbing, rupture, and cellular dysfunction found in many human diseases. We used Fluorescent Ubiquitin Cell Cycle Indicator (FUCCI) cells to determine how cell cycle changes affect the nucleus and actin force balance. While nuclear blebs are present equally throughout interphase, nuclear blebs form predominantly in G1 and then persist into G2 due to increased actin-based nuclear confinement and focal adhesion density in G1 vs. G2 cells. Upon artificial confinement, G2 nuclei ruptured more than G1 nuclei. Single nucleus micromanipulation force measurements confirmed that G1 nuclei are stronger than G2 nuclei in both the chromatin-based and lamin-based nuclear stiffness regimes. Decreased nuclear stiffness can be explained by loss of peripheral H3K9me3 from G1 to G2, recapitulated by H3K9me3 inhibition via Chaetocin. Cell cycle-based changes in nuclear and actin mechanics impact nuclear integrity and shape.

cell biology↗

bioRxiv2024

An internally controlled system to study microtubule network diversification links tubulin evolution to the use of distinct microtubule regulators

Diverse eukaryotic cells assemble microtubule networks that vary in structure and composition. While we understand how cells build microtubule networks with specialized functions, we do not know how microtubule networks diversify across deep evolutionary timescales. This problem has remained unresolved because most organisms use shared pools of tubulins for multiple networks, making it impossible to trace the evolution of any single network. In contrast, the amoeboflagellate Naegleria uses distinct tubulin genes to build distinct microtubule networks: while Naegleria builds flagella from conserved tubulins during differentiation, it uses divergent tubulins to build its mitotic spindle. This genetic separation makes for an internally controlled system to study independent microtubule networks in a single organismal and genomic context. To explore the evolution of these microtubule networks, we identified conserved microtubule binding proteins and used transcriptional profiling of mitosis and differentiation to determine which are upregulated during the assembly of each network. Surprisingly, most microtubule binding proteins are upregulated during only one process, suggesting that Naegleria uses distinct component pools to specialize its microtubule networks. Furthermore, the divergent residues of mitotic tubulins tend to fall within the binding sites of differentiation-specific microtubule regulators, suggesting that interactions between microtubules and their binding proteins constrain tubulin sequence diversification. We therefore propose a model for cytoskeletal evolution in which pools of microtubule network components constrain and guide the diversification of the entire network, so that the evolution of tubulin is inextricably linked to that of its binding partners.

cell biology↗

bioRxiv2023

A conserved pressure-driven mechanism for regulating cytosolic osmolarity

Controlling intracellular osmolarity is essential to all cellular life. Cells that live in hypo-osmotic environments like freshwater must constantly battle water influx to avoid swelling until they burst. Many eukaryotic cells use contractile vacuoles to collect excess water from the cytosol and pump it out of the cell. Although contractile vacuoles are essential to many species, including important pathogens, the mechanisms that control their dynamics remain unclear. To identify basic principles governing contractile vacuole function, we here investigate the molecular mechanisms of two species with distinct vacuolar morphologies from different eukaryotic lineages--the discoban Naegleria gruberi, and the amoebozoan slime mold Dictyostelium discoideum. Using quantitative cell biology we find that, although these species respond differently to osmotic challenges, they both use actin for osmoregulation, as well as vacuolar-type proton pumps for filling contractile vacuoles. We also use analytical modeling to show that cytoplasmic pressure is sufficient to drive water out of contractile vacuoles in these species, similar to findings from the alveolate Paramecium multimicronucleatum. Because these three lineages diverged well over a billion years ago, we propose that this represents an ancient eukaryotic mechanism of osmoregulation.

cell biology↗

bioRxiv2021

Naegleria's mitotic spindles are built from unique tubulins and highlight core spindle features

Naegleria gruberi is a unicellular eukaryote whose evolutionary distance from animals and fungi has made it useful for developing hypotheses about the last common eukaryotic ancestor. Naegleria amoebae lack a cytoplasmic microtubule cytoskeleton and assemble microtubules only during mitosis, and thus provides a unique system to study the evolution and functional specificity of mitotic tubulins and the resulting spindle. Previous studies showed that Naegleria amoebae express a divergent -tubulin during mitosis and we now show that Naegleria amoebae express a second mitotic - and two mitotic {beta}-tubulins. The mitotic tubulins are evolutionarily divergent relative to typical - and {beta}- tubulins, contain residues that suggest distinct microtubule properties, and may represent drug targets for the "brain-eating amoeba" Naegleria fowleri. Using quantitative light microscopy, we find that Naeglerias mitotic spindle is a distinctive barrel-like structure built from a ring of microtubule bundles. Similar to those of other species, Naeglerias spindle is twisted and its length increases during mitosis suggesting that these aspects of mitosis are ancestral features. Because bundle numbers change during metaphase, we hypothesize that the initial bundles represent kinetochore fibers, and secondary bundles function as bridging fibers.

cell biology↗

bioRxiv2020

Arp2/3 complex-mediated actin assembly drives microtubule-independent motility and phagocytosis in the evolutionarily divergent amoeba Naegleria

Much of our current understanding of actin-driven phenotypes in eukaryotes has come from the "yeast to human" opisthokont lineage, as well as the related amoebozoa. Outside of these groups lies the genus Naegleria, which shared a common ancestor with humans over a billion years ago, and includes the deadly "brain-eating amoeba." Unlike nearly every other known eukaryotic cell type, Naegleria amoebae are thought to lack cytoplasmic microtubules. The absence of microtubules suggests that these amoebae rapidly crawl and phagocytose bacteria using actin alone. Although this makes Naegleria a powerful system to probe actin-driven functions in the absence of microtubules, surprisingly little is known about Naeglerias actin cytoskeleton. Here, we use microscopy and genomic analysis to show that Naegleria amoebae have an extensive actin cytoskeletal repertoire, complete with nucleators and nucleation promoting factors. Naegleria use this cytoskeletal machinery to generate Arp2/3-dependent lamellar protrusions, which correlate with the capacity to migrate and phagocytose bacteria. Because human cells also use Arp2/3-dependent lamellar protrusions for motility and phagocytosis, this work supports an evolutionarily ancient origin for these actin-driven processes and establishes Naegleria as a natural model system for studying microtubule-independent cytoskeletal phenotypes.

cell biology↗