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Valdes-Hernandez, P. A.

Publications and source records attributed to Valdes-Hernandez, P. A..

2 recordsLinked to original sources

Identification negative BOLD responses using windkessel models

Alongside positive BOLD responses (PBR), a variety of negative BOLD responses (NBR) with distinct underlying mechanisms also occur. We identify five mechanisms of NBR: i) local/lateral/contralateral inhibition (LCI), ii) neuronal disruption of network activity (NDA), iii) altered balance of neuro-metabolic/vascular couplings (ANC), iv) arterial blood stealing (ABS), and v) venous blood backpressure (VBB). Detecting and classifying these mechanisms from BOLD signals is pivotal in understanding normal/pathological brain functions. This requires models and parameters with anatomical/functional interpretation that furnish the understanding of how these mechanisms are fingerprinted by their BOLD responses. Here, we used a windkessel model with viscoelastic compliance as well as dynamics of both neuronal and tissue/blood O2 to investigate the generation, detection, classification and interpretation of the BOLD hemodynamic response functions (HRF) of above mechanisms. Firstly, we evaluated the use of the general linear model to detect simulated NBRs. Secondly, we tested the ability of a machine learning classifier, built from a simulated ensemble of HRFs, to predict the mechanism underlying a new HRF. Crossvalidation indicates NDA and ANC can accurately be classified solely from fMRI BOLD signals; while LCI, ABS and VBB might require additional imaging modalities. Thirdly, we demonstrated that estimators of the model parameters determinant in the NBRs formation are accurate, and precise to certain resolutions. Finally, we successfully applied our detection/classification/estimation methodology to EEG-fMRI data in a clinical situation where several of these mechanisms could coexist. We believe that the proper identification and interpretation of NBR mechanisms have important clinical and cognitive implications in fMRI studies.

neuroscience

EECoG-Comp: An Open Source Platform for Concurrent EEG/ECoG Comparisons

Electrophysiological Source Imaging (ESI) methods are hampered by the lack of "gold standards" for model comparison. Concurrent electroencephalography (EEG) and electrocorticography (ECoG) recordings (namely EECoG) are considered gold standard to validating EEG generative models with primate models have the unique advantages of both flexibility and translational value in human research. However the severe EEG artifacts during such invasive experiments, the complexity of providing sufficiently detailed biophysical models, as well as lacking sound statistical connectivity comparison methods have hampered the availability and analysis of such datasets. In this paper, 1) we provide EECoG-Comp: an open source platform (https://github.com/Vincent-wq/EECoG-Comp) which encompasses the preprocessing, forward modeling, simulation and comparison module; 2) we take the simultaneous EECoG dataset from www.neurotycho.org as an example to illustrate the use of this platform and compare the source connectivity estimation performance of 4 popular ESI methods named MNE, LCMV, eLORETA and SSBL. The conclusion shows the limits of performance of these ESI connectivity estimators using both simulations and real data analysis. In fact, the use of this platform also suggests the need for both improved simultaneous EEG and ECoG experiments and ESI connectivity estimators.

bioinformatics