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Vaidya, N.

Publications and source records attributed to Vaidya, N..

21 records · Page 2Linked to original sources

Study of flow effects on temperature-controlled radio-frequency ablation using phantom experiments and forward simulations

PurposeBlood perfusion is known to add variability to hepatic radiofrequency ablation (RFA) treatment outcomes. Simulation-assisted treatment planning taking into account blood perfusion may solve this problem in the future. Hence, this study aims to study perfusion effects on RFA in a controlled environment and to compare the outcome to a prediction made using finite volume simulations. MethodsAblation zones were induced in tissue-mimicking, thermochromic ablation phantoms with a single flow channel, using a RF generator with needle temperature controlled power delivery and a monopolar needle electrode. Channel radius and saline flow rate were varied and the impact of saline flow on the ablated cross-sectional area, on a potential occurrence of directional effects as well as on the delivered generator power input was studied. Finite-volume simulations reproducing the experimental geometry, flow conditions and generator power input were conducted in a second step and compared to the experimental ablation outcomes. ResultsVessels of different radii affected the ablation result in different manners. For the channel radius of 0.275 mm both the ablated area and energy input reduced with increasing flow rate. For radius 0.9 mm the ablated area reduced with increasing flow rate but the energy input increased. An increasing area and energy input were observed towards larger flow rates for the channel radius of 2.3 mm. Directional effects, i.e., shrinking of the lesion upstream of the needle and an extension thereof downstream, were observed only for the smallest channel radius. The simulations qualitatively confirmed these observations. When using the simulations to make a prediction of ablation outcomes with flow, the mean absolute error between experimental and predicted ablation outcomes was reduced from 23% to 12% as compared to neglecting flow effects. ConclusionSimulations can improve the prediction of RFA ablation regions in the presence of various blood flow effects. Our findings therefore underline the potential of simulation-assisted, patient-individual RFA treatment planning and guidance for the prediction of RFA outcomes in the presence of blood flow. Additional comments-Teresa Nolte and Nikhil Vaidya contributed equally to this work. -Volkmar Schulz and Karen Veroy contributed equally to this work. -A single reference experiment, i.e., not using a flow channel, and the image in the upper left corner of Figure 4 were included into a publication submitted to Int. J. Hyperthermia for model validation purposes. O_FIG O_LINKSMALLFIG WIDTH=178 HEIGHT=200 SRC="FIGDIR/small/172957v1_fig4.gif" ALT="Figure 4"> View larger version (122K): org.highwire.dtl.DTLVardef@935182org.highwire.dtl.DTLVardef@1cc4eedorg.highwire.dtl.DTLVardef@51ad9aorg.highwire.dtl.DTLVardef@5c9625_HPS_FORMAT_FIGEXP M_FIG O_FLOATNOFig. 4C_FLOATNO Experimentally obtained ablation zones for all RFA experiments and the corresponding reference experiments. The experimental and simulated 70{degrees}C temperature contours are marked by a blue and a black line, respectively. The ablation needle was inserted from the left side. Saline flow was established from right to left through the flow channel located below the ablation area. Radius and flow rate for each experiment were as specified within the figure below the ablation zones. In four experiments, the experimental ablation zone shows an unexpected bump structure, which we marked by white arrows. The numbering of the experiments refers to Table 1. C_FIG

biophysics↗

A series of five population-specific Indian brain templates and atlases spanning ages 6 to 60 years

Anatomical brain templates are commonly used as references in neurological MRI studies, for bringing data into a common space for group-level statistics and coordinate reporting. Given the inherent variability in brain morphology across age and geography, it is important to have templates that are as representative as possible for both age and population. A representative-template increases the accuracy of alignment, decreases distortions as well as potential biases in final coordinate reports. In this study, we developed and validated a new set of T1w Indian brain templates (IBT) from a large number of brain scans (total n=466) acquired across different locations and multiple 3T MRI scanners in India. A new tool in AFNI, make_template_dask.py, was created to efficiently make five age-specific IBTs (ages 6-60 years) as well as maximum probability map (MPM) atlases for each template; for each age-groups template-atlas pair, there is both a "population-average" and a "typical" version. Validation experiments on an independent Indian structural and functional-MRI dataset show the appropriateness of IBTs for spatial normalization of Indian brains. The results indicate significant structural differences when comparing the IBTs and MNI template, with these differences being maximal along the Anterior-Posterior and Inferior-Superior axes, but minimal Left-Right. For each age-group, the MPM brain atlases provide reasonably good representation of the native-space volumes in the IBT space, except in a few regions with high inter-subject variability. These findings provide evidence to support the use of age and population-specific templates in human brain mapping studies. This dataset is made publicly available (https://hollabharath.github.io/IndiaBrainTemplates). HighlightsO_LIA new set of age-specific T1w Indian brain templates for ages 6-60 yr are developed and validated. C_LIO_LIA new AFNI tool, make_template_dask.py, for the creation of group-based templates. C_LIO_LIMaximum probability map atlases are also provided for each template. C_LIO_LIResults indicate the appropriateness of Indian templates for spatial normalization of Indian brains C_LI

neuroscience↗

Induction of an alternative 5’ leader enhances translation of Inpp5e and resistance to oncolytic virus infection

Residual cell-intrinsic innate immunity in cancer cells hampers infection with oncolytic viruses. mRNA translation is an important component of innate immunity, yet the targeted cellular mRNAs remain ill-defined. We characterized the translatome of resistant murine \"4T1\" breast cancer cells infected with three of the most clinically advanced oncolytic viruses: Herpes Simplex virus 1, Reovirus and Vaccinia virus. Common among all three infections were translationally de-repressed mRNAs involved in ciliary homeostasis including Inpp5e, encoding an inositol 5-phosphatase that modifies lipid second messenger signalling. Translationally repressed in the uninfected condition, viral infection induced expression of an Inpp5e mRNA variant that lacks repressive upstream open reading frames (uORFs) within its 5 leader and is consequently efficiently translated. Furthermore, we show that INPP5E contributes to antiviral immunity by altering virus attachment. These findings uncover a role for translational control through alternative 5 leader expression and assign ciliary proteins such as INPP5E to the cellular antiviral response.

molecular biology↗