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Vadstein, O.

Publications and source records attributed to Vadstein, O..

2 recordsLinked to original sources

The effect of periodic disturbances and carrying capacity on the significance of selection and drift in complex bacterial communities

Understanding how periodical disturbances affect the community assembly processes is vital for predicting temporal dynamics in microbial communities. The effect of dilutions as disturbances are poorly understood. We used a marine bacterial community to investigate the effect of disturbance (+/-) and carrying capacity (high/low) over 50 days in a dispersal-limited 2x2 factorial crossover study in triplicates. The communitys disturbance regime was crossed halfway. We modelled the rate of change in community composition between replicates and used this rate to quantify selection and ecological drift. The disturbed communities increased in Bray-Curtis similarity with 0.011{+/-}0.0045 (Period 1) and 0.0092{+/-}0.0080 day-1 (Period 2), indicating that selection dominated community assembly. The undisturbed communities decreased in similarity at a rate of -0.015{+/-}0.0038 day-1 in Period 1 and were stable in Period 2 at 0.00050{+/-}0.0040 day-1, suggesting drift structured community assembly. Interestingly, carrying capacity had minor effects on community dynamics. This study is the first to show that stochastic effects are suppressed by periodical disturbances resulting in exponential growth periods due to density-independent biomass loss and resource input. The increased contribution of selection as a response to disturbances implies that ecosystem prediction is achievable.

ecology↗

Comparative transcriptomics reveals domestication-associated features of Atlantic salmon lipid metabolism

Domestication of Salmo salar has imposed strong selection for production traits since the 1970s. The domestication has also imposed a radical shift in diet. Whereas wild salmon eats invertebrates, crustaceans and fish, the dietary lipids in domestic feed has since 1990 gradually shifted from fish oil (FO) to vegetable oil (VO), causing a decrease intake of long-chain polyunsaturated fatty acids (LC-PUFA). We tested the hypothesis that this shift has induced domestication-specific features of lipid metabolism in a 96-day feeding trial of domesticated and wild salmon fed diets based on FO, VO or phospholipids (PL). We addressed this by sampling tissues central in fat uptake (pyloric caeca) and processing (liver) and quantifying RNA expression and fatty acid composition. Domesticated salmon grew faster than wild salmon, with higher gene expression in glucose and lipid metabolism pathways. The promoters of differentially expressed genes were enriched for transcription factors involved in circadian clock regulation. Domesticated salmon had lower expression of cry2 and nr1d1, genes involved in negative regulation of circadian rhythm, with possible implications for the diurnal cycle of feed ingestion and basal metabolic rate. Only wild salmon showed a significant impact on growth of VO versus PL or FO feed, whereas domesticated but not wild salmon upregulated key LC-PUFA synthesis genes fads2d5 and fads2d6a in response to VO diet. Domesticated salmon had higher LC-PUFA but lower 18:3n-3 and 18:2n-6 in liver when fed VO, suggesting that domesticated salmon can better compensate for dietary shortage of LC-PUFA compared to wild salmon.

molecular biology↗