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VERMA, S.

Publications and source records attributed to VERMA, S..

2 recordsLinked to original sources

Unveiling Mechanistic and Structural Insights of EstS1 Esterase: A Potent Broad-Spectrum Phthalate Diester Degrading Enzyme

The ubiquitous presence of plastics and plasticizers around the globe has raised an alarming condition. Phthalate diesters are high-priority pollutants that mimic natural hormones and act as endocrine disruptors upon entering living systems. While certain bacterial esterases have been identified for their role in phthalate diester degradation, their structural and mechanistic characteristics remain largely unexplored. A thermostable and pH-tolerant EstS1 esterase from Sulfobacillus acidophilus catalyzes the conversion of low molecular weight phthalate diesters to monoesters. This study highlights the unique potential of EstS1 to degrade high molecular weight bis(2-ethylhexyl) phthalate (DEHP) by employing biophysical and biochemical approaches along with in-depth structural analysis utilizing high-resolution crystal structures in both apo and complex forms, with various substrates, products, and their analogs to elucidate mechanistic details. The catalytic tunnel mediating entry and exit of the substrate and product, respectively, centralized the Ser-His-Asp triad performing catalysis by bi-bi ping-pong mechanism, forming a tetrahedral intermediate. Additionally, structural analysis of the polypropylene analog jeffamine with EstS1 revealed effective covalent binding, demonstrating its multifunctional capability. Mutation analysis showed that the Met207Ala mutation abolished DEHP binding at the active site, confirming its essential role in supporting catalysis. These findings underscore the potential of EstS1 as a key tool for advancing technologies aimed at phthalate diesters biodegradation.

biophysics↗

Unveiling the genes and pathways that are dysregulated in dopaminergic neurons during both familial and sporadic Parkinson's disease.

Parkinsons disease (PD), a neurodegenerative disorder characterized by dopaminergic (DA) neuron loss in the substantia nigra, manifests as familial (genetically linked) or idiopathic (sporadic) forms. Despite distinct etiologies, both subtypes converge on shared pathological mechanisms that remain poorly understood. This study focused on identifying "hub genes" that might drive DA neuron degeneration in familial and idiopathic PD. The gene expression data from three publicly available datasets were reanalyzed. These datasets included samples from DA neurons derived from postmortem brains and patient-derived induced pluripotent stem cells. Twelve hub genes were identified to be dysregulated across all three datasets. The hub genes were found to play vital roles in membrane trafficking and vesicle-mediated transport. NetworkAnalyst-based reconstruction linked these hub genes to various other diseases. Experimental validation in neurotoxin-induced SH-SY5Y cell models of PD confirmed significant changes in the mRNA levels of some of the hub genes. Crucially, silencing one of the hub genes in Caenorhabditis elegans promoted DA neuron degeneration. Our study identifies potential candidates as therapeutic targets for DA neuron degeneration in familial and idiopathic PD.

neuroscience↗