Biology subjects

Ulstrup, J.

Publications and source records attributed to Ulstrup, J..

3 recordsLinked to original sources

bioRxiv2020

High-resolution electrochemistry of the extracellular electron transfer of Escherichia coli

Escherichia coli is one of the most important model bacteria in microorganism research and is broadly encountered in nature. In the present study, a wild-type E. coli strain K-12 was used for electrochemical investigations. Differential pulse voltammetry showed five pairs of redox peaks both for K-12 cells and the supernatant with potentials (anodic/cathodic) at -0.450/-0.378, -0.125/-0.105, -0.075/-0.055, +0.192/+0.264, and +0.300/+0.414 V (vs. Ag/AgCl), respectively. Chronoamperometry indicates that K-12 cells can produce immediate current by addition of glucose. The current production from K-12 can be 8-fold enhanced by 10.0 M exogenetic vitamin K3, but addition of 10.0 M riboflavin did not enhance the current production. Medium replacement experiments show that 50 % of the K-12 biofilm current was produced via direct extracellular electron transfer pathways. The study provides new insight in the voltammetry of strain K-12 and confirms that E. coli is an electrochemically active bacterium. E. coli has the potential to serve as a model bacterium for studying microbial extracellular electron transfer mechanisms.

microbiology↗

bioRxiv2020

The main activatory and tension-sensitive transitions occur within Prozac sensitive down-states of the potassium selective TREK-2 channel

The two-pore domain potassium selective (K2P) ion-channels TREK-1, TREK-2, and TRAAK essential mechanical stimulation sensors, and TREK-1/2 also targets for the antidepressant Nor-fluoxetine (Prozac). They respond directly to membrane tension by moving from the "down" to "up" conformation, a transition that is associated with a rise in open-probability. However, the mechanosensitive K2P (mK2P) channels can also open while occupying the down conformation, and although these channels are mostly closed, all structural models represent seemingly open conformations. To understand the dynamics between open/closed and up/down states and determine how membrane tension influences transitions between specific conformations, we use a novel method to analyze tension-driven activation of single purified and reconstituted TREK-2 channels. We screen a panel of prospective schemes to find the mechanism that best accounts for specific TREK-2 characteristics as tension-driven activation, suppression by Nor-fluoxetine, and single-channel kinetics. To adequately describe TREK-2 behavior, mechanistic schemes require two separate tension-sensitive transitions, one that occurs between distinct down conformations and one that moves the channel between down and up states. As membrane tension activates TREK-2, it is a transition within the structural down conformations that account for the major increase in open-probability (> 100 fold); the move from down to up further promotes channel opening, but with much lower potency (~3 fold activation).

biophysics↗

bioRxiv2019

Structure and autoregulation of a P4-ATPase lipid flippase

P4-ATPases are lipid flippases that drive active transport of phospholipids from the exoplasmic or lumenal to the cytosolic leaflets of eukaryotic membranes to maintain their asymmetric lipid composition. The molecular architecture of P4-ATPases and how they work in lipid recognition and transport has remained elusive. Using cryo-electron microscopy we have determined the structures of a P4-ATPase, specifically of the Saccharomyces cerevisiae Drs2p-Cdc50p, which is a phosphatidylserine and phosphatidylethanolamine specific lipid flippase. Drs2p-Cdc50p is autoinhibited by the Drs2p C-terminal tail and activated by phosphatidylinositol-4 phosphate (PI4P). We present three structures representing an autoinhibited, an intermediate, and a fully activated state. The analysis highlights specific features of P4-ATPases and reveals sites of auto-inhibition and PI4P-dependent activation. We observe the opening of a putative flippase pathway engaging conserved residues Ile508 of transmembrane segment 4 and Lys1018 and polar residues of transmembrane segment 5 in the centre of the lipid bilayer.

molecular biology↗