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Ubiali, D.

Publications and source records attributed to Ubiali, D..

2 recordsLinked to original sources

Human ASPDH is a 2-aminomuconate reductase that produces L-2-aminohex-3-enedioic acid in tryptophan catabolism

Most tryptophan catabolism in animals occurs through the kynurenine pathway, which generates the essential NAD cofactor and multiple bioactive metabolites. Knowledge of this pathway in eukaryotes ends at the unstable intermediate 2-aminomuconate (2-AM). Here, by leveraging evolutionary information from more than 5,000 eukaryotes, we identify two distinct genes acting downstream of 2-AM in fungi and metazoa. The fungal gene is homologous to bacterial 2-AM deaminase, whereas the metazoan gene is homologous to aspartate dehydrogenase (ASPDH), which in prokaryotes catalyses the first reaction of NAD biosynthesis. Biochemical and structural analyses show that human ASPDH has evolved an unprecedented function as an NAD(P)H-dependent 2-AM reductase (AMR) in tryptophan catabolism. The reaction forms L-2-aminohex-3-enedioic acid, an unsaturated -amino acid absent from current biological databases. Isotope-labeling NMR experiments and structural modelling support a mechanism in which hydride transfer is coupled to double-bond rearrangement of the conjugated system. These findings reveal a previously unknown metazoan branch of the kynurenine pathway, expand the repertoire of endogenous amino acids, and illustrate how comparative genomics can uncover hidden reactions in human metabolism.

biochemistry↗

Harnessing photosynthetic ATP for whole-cell biocatalysis in the cyanobacterium Synechocystis

Photosynthetic organisms use sunlight to produce ATP and NADPH powering their metabolism. Harnessing these products for driving biocatalytic reactions would enable to develop clean and sustainable alternatives for chemical reactions. In this study, we present the first demonstration that ATP produced from the photosynthetic process, can fuel a biocatalytic transformation in the whole-cell configuration. This result was achieved by expressing in the cyanobacterium Synechocystis sp. PCC 6803 an ATP-dependent enzyme, the {gamma}-Glutamyl-MethylAmide Synthetase from Methylovorus mays No. 9 (MmGMAS). The expressed enzyme was able to drive in the transgenic strain the light-driven biosynthesis of L-theanine. Consumption of ATP by the recombinant MmGMAS was even beneficial under strong illumination, protecting the photosynthetic electron transport from photodamage. These findings demonstrate the possibility of using photosynthetic microorganisms like Synechocystis as potential platform for sunlight driven biotransformations with wide potential biocatalytic applications. In this perspective, we further present the tridimensional structure of MmGMAS, which explains its promiscuous in vivo activity and provides the basis for its rational evolution.

biochemistry↗