Treonis, A. | bioRxiv Science

bioRxiv2026

Panagrolaimus einhardi sp. nov. and two sisters of fortune

Identifying nematodes to the species level is known to be complicated due to their morphological plasticity and limited number of taxonomically important characters. This is especially apparent in the genus Panagrolaimus, which comprises many cryptic species that are morphologically difficult to distinguish but differ genetically. These roundworms are particularly notable for their adaptation to extreme environments that are inhospitable to many other forms of life. Traditional morphological identification methods often fail at distinguishing genetically divergent populations due to high morphological plasticity in Panagrolaimus, limiting the efficacy of species discovery. High-quality genome assemblies overcome these challenges, offering a comprehensive blueprint of an organisms genetic structure that can be used for species identification. The analysis of ultra-conserved elements across multiple loci harvested from genome assemblies provides robust phylogenetic resolution. In this study, we integrate genome sequencing, ultra-conserved element analysis, and morphological assessment to identify and describe three novel species: Panagrolaimus einhardi sp. nov., formerly Panagrolaimus sp. ES5 from Germany; Panagrolaimus shuimeiren sp. nov. from the Namib Desert; and Panagrolaimus nebliphilus sp. nov. from the Atacama Desert. P. einhardi sp. nov. is named after Prof. Einhard Schierenberg, a renowned expert in roundworm development and cherished member of the nematode community, who isolated this species himself. All three species originate from different geographical locations, and their respective identification are supported by high-quality genome assemblies from either PacBio HiFi or Oxford Nanopore long-read data. The P. einhardi sp. nov. genome was scaffolded using Hi-C technology, which resulted in a 116 Mb collapsed assembly composed of 44 scaffolds (N50: 28 Mb). P. shuimeiren sp. nov. has an assembly size of 69 Mb with 49 scaffolds and a N50 of 13 Mb. P. nebliphilus sp. nov. assembly is 70 Mb with 24 scaffolds (N50: 13 Mb). The capacity of Panagrolaimus to adapt to extreme environments is driving research into their survival mechanisms, requiring comprehensive genomic resources. By combining morphology and genomics, we can gain a more comprehensive understanding of the rich biological diversity in lineages with numerous cryptic species, such as the Panagrolaimidae, thereby clarifying relationships where morphological data alone are ambiguous or confounded.

zoology↗

bioRxiv2024

Namibian fairy circles: Hostile territory for soil nematodes

Fairy circles are rings of grass with centers of bare soil that are found in some arid grasslands. Above- and belowground chemical and biological attributes of fairy circles have been explored in an ongoing debate about the ultimate causes of this pattern. We studied the soil nematode communities associated with Stipagrostis fairy circles along a 900-km range in the Namib Desert of Namibia in southern Africa. Nematode abundance and diversity were highest in soils along the vegetation rings that define fairy circles and in soils in the vegetated matrix surrounding the bare circles, demonstrating the positive impact of plant-derived resources on nematode communities. In contrast, soils from the bare centers of fairy circles had lower organic matter content and were nearly defaunated, averaging only 9.9 {+/-} 1.7 nematodes 100 g-1 soil. Bacterial-feeding Acrobeloides nematodes were the only taxa over-represented in center soils in comparison to ring soils. Our results indicate that nematode communities are influenced by the unique soil environments that the fairy circle vegetation pattern generates and suggest that the soils at the centers of fairy circles are uniquely hostile habitat for soil organisms as well as plants. Co-occurrence network analysis of nematode communities elucidated relationships among the taxa. For example, the abundances of dorylaims and Nothacrobeles were positively correlated across all soil positions, suggesting they have overlapping ecological niches. In ring soils, the abundances of fungal-feeding Aphelenchoides, Ditylenchus, and Hexatylus were positively correlated, likely due to enhanced fungal communities in these plant-influenced soils. Panagrobelus demonstrated niche specialization by being negatively correlated to two other bacterial-feeding taxa (Elaphonema in matrix soils and Acrobeloides in ring soils). The co-occurrence patterns revealed by these relatively low diversity communities provide insights into the potential roles of nematode interactions as well as environmental factors in community assembly.

ecology↗