Biology subjects

Tremblay, R. L.

Publications and source records attributed to Tremblay, R. L..

5 recordsLinked to original sources

bioRxiv2023

The Origin And Speciation Of Orchids

Orchids constitute one of the most spectacular radiations of flowering plants. However, their geographical origin, historical spread across the globe, and hotspots of speciation remain uncertain due to the lack of a broad phylogenomic framework. We present a new Orchidaceae phylogeny based on high-throughput and Sanger sequencing datasets, covering all five subfamilies, 17/22 tribes, 40/49 subtribes, 285/736 genera, and [~]7% (1,921) of the currently 29,524 accepted species. We then use it to infer geographic range evolution, diversity, and speciation patterns by adding curated geographical distribution data through the World Checklist of Vascular Plants. Orchids most recent common ancestor is traced back to the Late Cretaceous in Laurasia. The modern Southeast Asian range of subfamily Apostasioideae is interpreted as relictual, matching the history of numerous clades that went extinct at higher latitudes following the global climate cooled during the Oligocene. Despite their ancient origins, modern orchid species diversity mainly originated over the last 5 Ma, with the fastest speciation rates found in south-eastern Central America. Our results substantially alter our understanding of the geographic origin of orchids, previously proposed as Australian, and further pinpoint the role of Central American as a region of recent and explosive speciation.

evolutionary biology↗

bioRxiv2023

A standard protocol to report discrete stage-structured demographic information

O_LIStage-based demographic methods, such as matrix population models (MPMs), are powerful tools used to address a broad range of fundamental questions in ecology, evolutionary biology, and conservation science. Accordingly, MPMs now exist for over 3,000 species worldwide. These data are being digitised as an ongoing process and periodically released into two large open-access online repositories: the COMPADRE Plant Matrix Database and the COMADRE Animal Matrix Database. During the last decade, data archiving and curation of COMPADRE and COMADRE, and subsequent comparative research, have revealed pronounced variation in how MPMs are parameterized and reported. C_LIO_LIHere, we summarise current issues related to the parameterisation and reporting of MPMs that arise most frequently and outline how they affect MPM construction, analysis, and interpretation. To quantify variation in how MPMs are reported, we present results from a survey identifying key aspects of MPMs that are frequently unreported in manuscripts. We then screen COMPADRE and COMADRE to quantify how often key pieces of information are omitted from manuscripts using MPMs. C_LIO_LIOver 80% of surveyed researchers (n=60) state a clear benefit to adopting more standardised methodologies for reporting MPMs. Furthermore, over 85% of the 300 MPMs assessed from COMPADRE and COMADRE omitted one or more elements that are key to their accurate interpretation. Based on these insights, we identify fundamental issues that can arise from MPM construction and communication and provide suggestions to improve clarity, reproducibility, and future research utilising MPMs and their required metadata. To fortify reproducibility and empower researchers to take full advantage of their demographic data, we introduce a standardized protocol to present MPMs in publications. This standard is linked to www.compadre-db.org, so that authors wishing to archive their MPMs can do so prior to submission of publications, following examples from other open-access repositories such as DRYAD, Figshare, and Zenodo. C_LIO_LICombining and standardising MPMs parameterized from populations around the globe and across the tree of life opens up powerful research opportunities in evolutionary biology, ecology, and conservation research. However, this potential can only be fully realised by adopting standardised methods to ensure reproducibility. C_LI

ecology↗

bioRxiv2021

Find me if you can: Pre- and Post-hurricane Densities of the Red-bellied Racer (Alsophis rufiventris) on St. Eustatius, and a review of the genus in the Caribbean

We estimated population densities of the red-bellied racer (Alsophis rufiventris) on the Caribbean island of St. Eustatius in 2011, 2018 and 2019 to determine the likely influence of hurricanes Irma and Maria (September 2017), in addition to evaluating abiotic parameters which may be correlated with its presence. Surveys were conducted at seven sites in 2011 prior to the hurricanes, and at 81 and 108 sites in 2018 and 2019 respectively posterior to the hurricanes. A total of 8.2 ha was surveyed in 2011, and 11.42 ha in 2018/2019. The pre-hurricane (2011) racer density estimate was 9.2/ha (min 7.3 - max 11.6); post-hurricane estimates were 4.6/ha (min 3.4 - max 6.0) in 2018 and 5.0/ha (min 3.8 - max 6.5) in 2019. The pre-hurricane encounter rate of individual racers was 16.0 snakes/hour compared to 0.34 snakes/hour in 2018 and 0.41 snakes/hour in 2019 (post-hurricane). The decrease in encounter rates between 2011 and 2019 implies a negative impact of the hurricanes on racer abundance. Based on calculations of detection probability (0.02 in 2018 and 0.03 in 2019), post-hurricane lambda estimates were 1.82 (95% CI 0.66 - 5.01) in 2018 and 1.60 (95% CI 0.39 - 6.65) snakes/ha in 2019. Given the current small size of the remaining population and the presence of invasive species across the snakes range, this species could be at risk of local extirpation. We suggest conservation actions such as invasive species management and habitat restoration to enable further recovery.

ecology↗

bioRxiv2018

Breaking from the cage and taking over an island: Relentless increase and range expansion of white-winged parakeets in Puerto Rico

Introduced psittacine birds can become highly invasive. In this study, we assessed invasions of Psittaciformes in Puerto Rico. We reviewed the literature, public databases, citizen science records, and performed in situ population surveys across the island to determine the historical and current status and distribution of psittacine species. We used count data from Ebird to determine population trends. For species whose populations were increasing, we modelled their potential distribution using niche modeling techniques. We found 46 Psittaciformes in Puerto Rico, of which 26% are only present as pets, at least 29 species have been reported in the wild, and of those, there is evidence that at least 12 species are breeding. Our results indicate that most introduced species which have been detected as established still persist, although mostly in localized areas and small populations. Clear evidence of invasiveness was found for Brotogeris versicolurus and Myiopsitta monachus, which have greatly expanded their range in recent years. Psittacara erythrogenys and Eupsittacula canicularis also showed population increases, although to a lesser degree. The niche models predicted suitable areas for the four species, and also indicate the potential for range expansion. We discuss the factors leading to invasion success, assess the potential impacts, and we discuss possible management strategies and research prospects.

ecology↗

bioRxiv2018

From the cage to the wild: Introductions of Psittaciformes to Puerto Rico with emphasis on the invasive ecology of the white-winged parakeet

In this study, we assessed invasions of Psittaciformes in Puerto Rico. We reviewed the literature, public databases, citizen science records, and performed in situ population surveys across the island to determine the historical and current status and distribution of psittacine species. We used count data from Ebird to determine population trends. For species whose populations were increasing, we modelled their potential distribution using niche modeling techniques. Focusing on the white-winged parakeet (Brotogeris versicolurus), which was considered the most successful psittacine species by the year 2000, we evaluated the population size, calculated growth rates and estimated the breeding proportion in two populations by performing roost counts for four consecutive years. We found a total of 46 Psittaciformes present in Puerto Rico, of which 26% are only present as pets, at least 29 species have been reported in the wild, and of those, there is evidence that at least 12 species are breeding. Our results indicate that most introduced species which have been detected as established still persist, although mostly in localized areas and small populations. Clear evidence of invasiveness was found for B. versicolurus and Myiopsitta monachus, which have greatly expanded their range. Moreover, Psittacara erythrogenys and Eupsittacula canicularis also showed population increase. The niche models predicted suitable areas for the four species, and also indicate the potential for range expansion. Population estimates of the white-winged parakeet during the study period showed a steady increase, and exhibited exponential growth, with geometric mean population growth rates of 1.25 per year. Currently growth rate of the white-winged parakeet does not appear to be limited by any predator, resources or nest availability, and we expect them to continue increasing and expanding their range. We discuss the factors leading to invasion success, assess the potential impacts, and we discuss possible management strategies and research prospects.

ecology↗