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Treier, S.

Publications and source records attributed to Treier, S..

2 recordsLinked to original sources

Explainable AI shows climate impacts on wheat yields: insights from 30 years of field data.

Wheat (Triticum aestivum L.) is amongst the worlds most important staple crops and primary food source for an estimated 35% of the global population. Climate impacts have caused global yield stagnation and quantifying the climatic variables influencing wheat yield is critical to anticipate yield losses and design climate-resilient agricultural strategies. Here, we use a unique 30-year dataset on winter wheat variety trials in six sites across Switzerland, explainable artificial intelligence (XAI) and interpretable machine learning (IML) methods (i.e., decision trees and gradient boosting models combined with post hoc tests) to elucidate climate drivers on wheat yields. We showed based on 405 varieties and over 10,000 observations, that climatic variables such as cumulative solar radiation, precipitation from sowing to harvest and genotype makeup are significant yield drivers. Partial dependence plots and variable interaction analyses revealed, for example, a yield plateau above cumulative solar radiation levels of [~]3000 MJ m-{superscript 2}, suggesting complex genotype-by-environment interactions. These findings suggest that XAI adds important biological interpretability to predictive performance, and reveals the mechanisms how climate affects wheat yields. Our methodological framework and results can inform breeding activities, agronomic management, and adaptation strategies under climate change across environmental conditions in Switzerland and with global ramifications.

plant biology↗

The FIP 1.0 Data Set: Highly Resolved Annotated Image Time Series of 4,000 Wheat Plots Grown in Six Years

BackgroundUnderstanding genotype-environment interactions of plants is crucial for crop improvement, yet limited by the scarcity of quality phenotyping data. This data note presents the Field Phenotyping Platform 1.0 data set, a comprehensive resource for winter wheat research that combines imaging, trait, environmental, and genetic data. FindingsWe provide time series data for more than 4,000 wheat plots, including aligned high-resolution image sequences totaling more than 153,000 aligned images across six years. Measurement data for eight key wheat traits is included, namely canopy cover values, plant heights, wheat head counts, senescence ratings, heading date, final plant height, grain yield, and protein content. Genetic marker information and environmental data complement the time series. Data quality is demonstrated through heritability analyses and genomic prediction models, achieving accuracies aligned with previous research. ConclusionsThis extensive data set offers opportunities for advancing crop modeling and phenotyping techniques, enabling researchers to develop novel approaches for understanding genotype-environment interactions, analyzing growth dynamics, and predicting crop performance. By making this resource publicly available, we aim to accelerate research in climate-adaptive agriculture and foster collaboration between plant science and machine learning communities.

plant biology↗