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Tovar, C.

Publications and source records attributed to Tovar, C..

3 recordsLinked to original sources

Trait misalignment risk in North American forests under climate change

Climate change is expected to alter forest community composition and functioning, with consequences for the ecosystem services forests provide. However, most macroecological projections focus on individual species distributions and offer limited insight into whether entire communities will remain functionally compatible with future climatic conditions. Here we quantify the risk that present-day forest communities will become functionally misaligned with projected climates using a trait-based approach. We analysed forest inventory data from more than 42,000 mature plots across the United States and Canada. For each plot we estimated community-weighted means for 24 functional traits describing leaf economics, hydraulic function, wood structure, abiotic tolerances and symbiotic strategies. We modelled relationships between community functional composition and environmental conditions, and used these relationships to estimate the trait profiles most compatible with projected late-century climates (2080-2100). Trait-environment misalignment (TEM) risk was quantified as the multivariate distance between current community trait composition and the trait profile associated with the projected future climate at each location, accounting for covariance among traits and intraspecific trait variation. Projected climatic conditions favour trait combinations associated with greater hydraulic capacity and reduced cold and shade tolerance. However, the magnitude of functional misalignment varies strongly across space. The highest TEM risk occurs in high-latitude and montane conifer forests across western and central North America, whereas many mid-latitude broadleaf and mixed forests show lower risk because projected climatic changes reinforce existing drought-adapted functional strategies. Critically, high species richness was the strongest predictor of reduced risk, reinforcing the importance of biodiversity in buffering against adverse outcomes. Our results suggest that many forests are projected to experience climatic conditions associated with functional strategies that differ from those characterising the current community. By identifying where the largest functional adjustments are implied, this trait-based framework provides a scalable way to pinpoint forests most likely to experience suboptimal climate conditions and to prioritise monitoring and climate-adapted management.

ecology↗

Contrasting dates of rainforest fragmentation in Africa inferred from trees with different dispersal abilities

The rainforests of Tropical Africa have fluctuated over time. Although today the forest cover is continuous in Central Africa this may have not always been the case, as the scarce fossil record in this region suggests that more arid conditions might have significantly reduced the density of trees during the Ice Ages. Our aim was to investigate whether the dry ice-age periods left a genetic signature on tree species that can be used to date the past fragmentation of the rainforest. We sequenced reduced representation libraries of 182 samples representing five Legume tree species that are widespread in African rainforests and seven outgroups. Phylogenetic analyses identified an early divergent lineage for all species in West Africa (Upper Guinea), and two clades in Central Africa: Lower Guinea-North and Lower Guinea-South. As the structure separating the Northern and Southern clades cannot be explained by geographic barriers, we tested other hypotheses using demographic model testing. The best estimates recovered using {partial}a{partial}I indicate that the two clades split between the Upper Pliocene and the Pleistocene, a date compatible with forest fragmentation driven by ice-age climatic oscillations. Furthermore, we found remarkably older split dates for the shade-tolerant tree species with non-assisted seed dispersal than for light-demanding long-distance wind-dispersed trees. We also show that the genetic diversity significantly declines with the distance from ice-age refugia in the two long-distance dispersed species only. Different recolonisation abilities after recurrent cycles of forest fragmentation seem to explain why we observe congruent genetic spatial structures across species with contrasted timescales.\n\nSIGNIFICANCE STATEMENTAlthough today the rainforest cover is continuous in Central Africa, the scarce fossil record suggests that arid conditions during the Ice Ages might have reduced the density of trees during the Ice Ages. However, the vast majority of the fossil pollen records preserved in Tropical Africa is too young to inform about this period. Investigating whether the past climate change left a genetic signature on trees can thus be useful to date past forest fragmentation. However, most genetic studies available to date lack resolution as they use limited numbers of loci. In this study we use modern DNA technology to study five Legume trees. Our results show significant differentiation of the populations of each species at a date compatible with forest fragmentation driven by ice-age climatic oscillations. Contrasted timescales were obtained for each species, which probably reflects their different recolonisation abilities after forest fragmentation.

evolutionary biology↗

Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia

BackgroundColombia was the second most affected country during the American Zika virus (ZIKV) epidemic, with over 109,000 reported cases. Despite the scale of the outbreak, limited genomic sequence data were available from Colombia. We sought to sequence additional samples and use genomic epidemiology to describe ZIKV dynamics in Colombia.\n\nMethodsWe sequenced ZIKV genomes directly from clinical diagnostic specimens and infected Aedes ae-gypti samples selected to cover the temporal and geographic breadth of the Colombian outbreak. We performed phylogeographic analysis of these genomes, along with other publicly-available ZIKV genomes from the Americas, to estimate the frequency and timing of ZIKV introductions to Colombia.\n\nResultsWe attempted PCR amplification on 184 samples; 19 samples amplified sufficiently to perform sequencing. Of these, 8 samples yielded sequences with at least 50% coverage. Our phylogeo-graphic reconstruction indicates two separate introductions of ZIKV to Colombia, one of which was previously unrecognized. We find that ZIKV was first introduced to Colombia in February 2015 (95%CI: Jan 2015 - Apr 2015), corresponding to 5 to 8 months of cryptic ZIKV transmission prior to confirmation in September 2015. Despite the presence of multiple introductions, we find that the majority of Colombian ZIKV diversity descends from a single introduction. We find evidence for movement of ZIKV from Colombia into bordering countries, including Peru, Ecuador, Panama, and Venezuela.\n\nConclusionsSimilarly to genomic epidemiologic studies of ZIKV dynamics in other countries, we find that ZIKV circulated cryptically in Colombia. This more accurate dating of when ZIKV was circulating refines our definition of the population at risk. Additionally, our finding that the majority of ZIKV transmission within Colombia was attributable to transmission between individuals, rather than repeated travel-related importations, indicates that improved detection and control might have succeeded in limiting the scale of the outbreak within Colombia.

genomics↗