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Torres, B.

Publications and source records attributed to Torres, B..

2 recordsLinked to original sources

Integrating nested species distribution models and multicriteria prioritization into an open-access geoportal for tropical forest restoration

Tropical forests face increasing pressures from climate change and deforestation, which calls for the selection of climate-resilient species for ecological restoration. Species distribution models (SDMs) calibrated solely with regional data in the tropics often suffer from niche truncation due to data scarcity. We applied spatially nested models (N-SDMs), in one of their first applications in the tropics, to assess the current and future climatic suitability of 199 native forest species of continental Ecuador, integrating global and regional data through a nested approach that consistently outperformed regional-only SDMs (AUC = 0.95 vs. 0.83). Given a widespread projected loss of climatic suitability and an insufficient representation within the National System of Protected Areas, passive conservation alone is insufficient, which calls for an active prioritization tool. We developed a restoration potential index (IPR) that provides a continuous score for each species in every cell by integrating current potential presence, future climatic confidence and documented ecosystem services. This species- and cell-level resolution yields a restoration priority ranking that is robust across climate scenarios and is available for any site in the territory, distinguishing species of consolidated priority from those requiring urgent active propagation owing to their reduced current potential extent. All results are made available through the interactive geoportal geoSABINA, providing the first spatially explicit and climate-informed infrastructure to support the implementation of the Ecuadorian National Forest Restoration Plan (PNRF) and equivalent frameworks in the American tropics

plant biology↗

Population structure of human-infecting and environmental isolates of Coccidioides immitis, the fungus causing Valley fever

Coccidioides is a soil-dwelling fungus that can cause serious disease (coccidioidomycosis or Valley fever) when its spores are inhaled. Limiting exposure to environmental spores is critical for disease prevention, yet how Coccidioides is distributed in the soil and where people become exposed remain almost entirely unknown. Here we report the first genomes of environmental isolates of C. immitis, from sampling of rodent burrows in the highly endemic region--California's San Joaquin Valley. We sequenced 16 soil-derived isolates alongside 26 novel patient-derived isolates collected from the same region to investigate genetic structure and diversity in C. immitis, and the potential origins of human infection. We found evidence of regional population structure among environmental C. immitis strains, though with extensive allele sharing between clusters. Most patient isolates derived nearly 100% of their ancestry from a genetic cluster shared with soil isolates, suggesting that the Coccidioides strain inhaled by a human host represents a random draw from the environmental pathogen pool. Further, we found that high levels of genomic diversity in environmental C. immitis are partitioned into effectively clonal lineages within individual rodent burrows, with isolates from neighboring burrows differing by over 13,000 SNPs. Together, these data support a picture of diverse, regionally structured environmental populations of C. immitis, suggesting that strategies to assign patient exposures to general regions within the San Joaquin Valley may be possible.

ecology↗